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[179282_at]

Description C13C4.6 /REP_DB=WormBase Gene ID /WP=CE08131 /TR=O01928 /GB=CAB07312.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 97      6grp_total > 87      4grp_total > 05      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 221
1 2 3 4 range
A 150.6
(-0.3)
P 		65.5
(-3)
A 		65.1
(-3)
M 		257.2
(3)
P 		192
B 161
(-0.5)
P 		88.3
(-2.5)
A 		71.8
(-3)
A 		286.4
(3)
P 		215
C 108.6
(-2)
P 		80.5
(-3)
A 		79.6
(-3)
P 		258.3
(3)
P 		179
avr 140.1
(-0.9) 		78.1
(-2.8) 		72.2
(-3) 		267.3
(3) 		195

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 206
1 2 3 4 5 6 range
A 121.1
(-2.6)
A 		112.1
(-3)
P 		139.8
(-1.8)
P 		150.2
(-1.3)
P 		203.8
(1.1)
P 		245.6
(3)
P 		134
B 80.7
(-3)
P 		160.3
(-0.7)
P 		136
(-1.4)
P 		141.4
(-1.2)
P 		207.3
(0.7)
P 		287
(3)
P 		206
C 95.1
(-3)
P 		141
(-1.3)
P 		121.4
(-2)
P 		116.9
(-2.2)
P 		146.7
(-1)
P 		253.7
(3)
P 		159
avr 99
(-3) 		137.8
(-1.6) 		132.4
(-1.8) 		136.2
(-1.6) 		185.9
(0.2) 		262.1
(3) 		163
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 54.8
(3)
P 		14.2
(-3)
A 		17
(-2.6)
M 		37.7
(0.5)
P 		41
B 51.4
(1.7)
P 		21.8
(-2.3)
A 		16.6
(-3)
A 		61
(3)
P 		44
C 35.9
(0.7)
P 		23.1
(-3)
A 		27.7
(-1.7)
P 		43.6
(3)
P 		21
avr 47.4
(3) 		19.7
(-3) 		20.4
(-2.8) 		47.4
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 22.3
(-3)
A 		39.9
(-0.3)
P 		30.4
(-1.8)
P 		38.1
(-0.6)
P 		61.5
(3)
P 		59.8
(2.7)
P 		39
B 28.1
(-3)
P 		53.4
(-1.1)
P 		33
(-2.6)
P 		37.5
(-2.3)
P 		84.2
(1.3)
P 		107
(3)
P 		79
C 35.2
(-1.9)
P 		43
(-1.1)
P 		30.9
(-2.3)
P 		23.5
(-3)
P 		47.5
(-0.7)
P 		84.9
(3)
P 		61
avr 28.5
(-3) 		45.4
(-1.2) 		31.4
(-2.7) 		33
(-2.5) 		64.4
(0.9) 		83.9
(3) 		55
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179282_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14301
Sequence Type Exemplar sequence
Representative Public ID C13C4.6 NCBI
Target Description C13C4.6 /REP_DB=WormBase Gene ID /WP=CE08131 /TR=O01928 /GB=CAB07312.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073641(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073641 NCBI Caenorhabditis elegans C13C4.6 (C13C4.6) mRNA, complete cds. 11/11 None
GENEFINDER00000013570 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12123539:12127445:1 11/11 None
C13C4.6 ENSEMBL cdna:known chromosome:CEL140:V:12124257:12127445:1 gene:C13C4.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013565 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12124256-12127445(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C13C4.6
Entrez Gene 182567 Entrez gene
SwissProt O01928 EMBL-EBI
WormBase CE08131 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07312 Hypothetical protein C13C4.6 [Caenorhabditis elegans] ref|NP_506042.1| C13C4.6 [Caenorhabditis elegans] 0.0
blast CAE75398 Hypothetical protein CBG23387 [Caenorhabditis briggsae] 1.0E-166
blast CAE75398 Hypothetical protein CBG23387 [Caenorhabditis briggsae] 1.0E-165
blast CAB07317 Hypothetical protein C27A7.6 [Caenorhabditis elegans] emb|CAB02792.1| Hypothetical protein C27A7.6 [Caenorhabditis elegans] ref|NP_506043.1| C27A7.6 [Caenorhabditis elegans] 4.0E-71
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506042.1 12 17-39,66-88,95-117,121-140,161-183,193-215,249-268,283-302,309-331,336-358,379-401,416-438
C13C4.6 12 17-39,66-88,95-117,121-140,161-183,193-215,249-268,283-302,309-331,336-358,379-401,416-438
GENEFINDER00000013570 12 77-96,125-147,154-176,180-199,220-242,252-274,308-327,342-361,368-390,395-417,438-460,475-497
Sequence
Target Sequence 
>C. ELEGANS:179282_AT
aaatggcctcatttatacttctaatgccatcaactatagaggttataatttgaaagggta
tccaatagcaatcgccacgatggtctgcatgttttcagcctatttcgtaggagtaattgc
agatagaacaagaaagttcaaattgatcgcaataataaacgcacttgttgtagccgtttg
tgtactggtacttcgtctgtatttaataaaaacttatacgggatggtatgattcagtaat
tgtttgtacacttttaagcattatcatgtcctgttgtgctatacatacaccgattggaaa
tgagatgggagttgagacaacttacccagttcaagaatcaatttctacaggagttttgaa
tactttcggtcaagcttggttattctgcttatattttattatgtattctttacaagaatc
aaattgggtttacaagaacaaccgtaaaggaggaagctgggaattagcccttgacttctg
ggcaggaatgtctattctaaactttattgtggctgtaatattcttgagaccccgatataa
ccgtttaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATGGCCTCATTTATACTTCTAAT 448 121 801 Antisense
GGGTATCCAATAGCAATCGCCACGA 383 497 856 Antisense
ATCGCCACGATGGTCTGCATGTTTT 684 37 871 Antisense
TGCATGTTTTCAGCCTATTTCGTAG 510 577 886 Antisense
ACGCACTTGTTGTAGCCGTTTGTGT 8 93 959 Antisense
GTGTACTGGTACTTCGTCTGTATTT 159 487 980 Antisense
GTCCTGTTGTGCTATACATACACCG 180 477 1068 Antisense
GAATACTTTCGGTCAAGCTTGGTTA 555 319 1158 Antisense
GAATTAGCCCTTGACTTCTGGGCAG 575 323 1261 Antisense
GTGGCTGTAATATTCTTGAGACCCC 656 491 1309 Antisense
TGAGACCCCGATATAACCGTTTACA 590 391 1325 Antisense
Sequence Source Affymetrix Proprietary Database