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[179280_at]

Description F13E6.3 /REP_DB=WormBase Gene ID /WP=CE03200 /TR=Q19401 /GB=CAA92118.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 75      4grp_total > 11      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 174
1 2 3 4 range
A 89.3
(-1.4)
A 		91
(-1.4)
A 		49.7
(-3)
A 		202.6
(3)
P 		153
B 52
(-3)
A 		53.8
(-2.8)
A 		60.1
(-2.3)
A 		121.5
(3)
P 		70
C 80.9
(-0.7)
P 		78.8
(-0.8)
A 		28.5
(-3)
A 		164.9
(3)
P 		136
avr 74.1
(-1.6) 		74.5
(-1.5) 		46.1
(-3) 		163
(3) 		117

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 111.2
(1.4)
A 		47.8
(-3)
A 		134.5
(3)
P 		123.4
(2.2)
P 		96.4
(0.4)
P 		108.6
(1.2)
P 		87
B 84.3
(-2.7)
A 		115.9
(1.4)
P 		104.7
(-0.1)
P 		81.8
(-3)
M 		120.8
(2)
P 		128.5
(3)
P 		47
C 71.1
(-3)
A 		144.5
(3)
P 		85.7
(-1.8)
A 		102.7
(-0.4)
A 		106.2
(-0.1)
A 		112.1
(0.4)
P 		73
avr 88.9
(-3) 		102.7
(0) 		108.3
(1.2) 		102.6
(-0) 		107.8
(1.1) 		116.4
(3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 32.5
(3)
A 		19.8
(-0.9)
A 		13
(-3)
A 		29.7
(2.1)
P 		20
B 16.6
(-1.4)
A 		13.3
(-3)
A 		13.9
(-2.7)
A 		25.9
(3)
P 		13
C 26.8
(2.7)
P 		22.7
(1.3)
A 		9.9
(-3)
A 		27.8
(3)
P 		18
avr 25.3
(2) 		18.6
(-0.6) 		12.3
(-3) 		27.8
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 20.5
(-1.5)
A 		17
(-3)
A 		29.3
(2.2)
P 		31.3
(3)
P 		29.1
(2.1)
P 		26.4
(0.9)
P 		14
B 29.3
(-1.3)
A 		38.6
(0.7)
P 		25.4
(-2.2)
P 		21.7
(-3)
M 		49.1
(3)
P 		47.9
(2.7)
P 		27
C 26.4
(-1.5)
A 		44.1
(3)
P 		21.8
(-2.7)
A 		20.7
(-3)
A 		34.4
(0.5)
A 		37.5
(1.3)
P 		23
avr 25.4
(-2.6) 		33.2
(1) 		25.5
(-2.6) 		24.6
(-3) 		37.5
(3) 		37.3
(2.9) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179280_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16967
Sequence Type Exemplar sequence
Representative Public ID F13E6.3 NCBI
Target Description F13E6.3 /REP_DB=WormBase Gene ID /WP=CE03200 /TR=Q19401 /GB=CAA92118.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077387(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077387 NCBI Caenorhabditis elegans F13E6.3 (F13E6.3) mRNA, complete cds. 11/11 None
F13E6.3 ENSEMBL cdna:known chromosome:CEL140:X:10680553:10682681:1 gene:F13E6.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000007370 8/11 Cross Hyb Matching Probes None
GENEFINDER00000007378 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10680552-10682681(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F13E6.3
Entrez Gene 184417 Entrez gene
SwissProt Q19401 EMBL-EBI
WormBase CE03200 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92118 Hypothetical protein F13E6.3 [Caenorhabditis elegans] ref|NP_509788.1| F13E6.3 [Caenorhabditis elegans] 1.0E-148
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509788.1 1 41-63
F13E6.3 1 41-63
Sequence
Target Sequence 
>C. ELEGANS:179280_AT
attattgctctttttctgtttcacacattattagctcattcagaccactttcgacaatgt
gtgatcatccccgcatattccagatgcatctcatagaacgggcttcaaaagtgtacaaat
ggacagaaacagccgattctataattgtcgacgatcaatttggaacttacatctccgagc
gaatcagtagttggcgaaagattctggcagaatctcgtgaggttgtactctcataccccg
aagatagtgatagtgattctccaggaccttcatcagtggatgcacgtaaagtgccaaaga
gcgaagcgaaaaaacgtggacgtgaaaacaaaaaactggtgcacaatgactcaagtgaga
acaaggaaccttcagaatcgccgacggctgacccaacaatgaaaaagccgctttggccgt
gcgcagtctgcaacgcgagtgctaaatttggcagttgtaaatgcaaaggatgtgatcagt
ggagccacttgacttgtgttgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTATTGCTCTTTTTCTGTTTCACA 172 15 263 Antisense
TATTAGCTCATTCAGACCACTTTCG 347 661 291 Antisense
TTCGACAATGTGTGATCATCCCCGC 412 695 312 Antisense
CATCCCCGCATATTCCAGATGCATC 550 211 328 Antisense
GGAACTTACATCTCCGAGCGAATCA 408 529 424 Antisense
TGTACTCTCATACCCCGAAGATAGT 456 559 486 Antisense
GTGATAGTGATTCTCCAGGACCTTC 390 483 509 Antisense
TCAGAATCGCCGACGGCTGACCCAA 524 623 634 Antisense
TGAAAAAGCCGCTTTGGCCGTGCGC 142 573 662 Antisense
CGCAGTCTGCAACGCGAGTGCTAAA 659 253 684 Antisense
GTGGAGCCACTTGACTTGTGTTGGA 143 491 741 Antisense
Sequence Source Affymetrix Proprietary Database