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[179279_at]

Description T03F7.3 /REP_DB=WormBase Gene ID /WP=CE06346 /TR=Q22114 /GB=CAA98517.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 35      6grp_cgc > 44      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 33.3
(-3)
A 		60.6
(3)
P 		45.2
(-0.4)
P 		52.3
(1.2)
P 		27
B 48.5
(2.2)
A 		53
(3)
A 		24.7
(-2)
A 		18.8
(-3)
A 		34
C 27.1
(-3)
M 		61.6
(2.3)
P 		31.8
(-2.3)
P 		65.8
(3)
P 		39
avr 36.3
(-2.4) 		58.4
(3) 		33.9
(-3) 		45.6
(-0.1) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 61.1
(2.9)
A 		41
(-1.7)
A 		46
(-0.6)
P 		61.6
(3)
P 		53
(1)
P 		35.5
(-3)
A 		26
B 38.3
(0.2)
P 		40.3
(0.7)
P 		34.8
(-0.7)
A 		25.3
(-3)
A 		49.6
(3)
P 		33.1
(-1.1)
A 		24
C 31.2
(-1.8)
A 		67.5
(2.9)
P 		67.9
(3)
P 		22
(-3)
A 		38.7
(-0.8)
A 		43.8
(-0.2)
A 		46
avr 43.5
(0.2) 		49.6
(3) 		49.6
(3) 		36.3
(-3) 		47.1
(1.9) 		37.5
(-2.5) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 12.1
(1.8)
A 		13.2
(3)
P 		11.8
(1.5)
P 		7.7
(-3)
P 		6
B 15.5
(3)
A 		13.1
(1.7)
A 		5.7
(-2.1)
A 		4
(-3)
A 		12
C 9
(-3)
M 		17.7
(3)
P 		11.1
(-1.6)
P 		11.1
(-1.6)
P 		9
avr 12.2
(0.9) 		14.7
(3) 		9.5
(-1.4) 		7.6
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 11.3
(-0.9)
A 		14.6
(1.8)
A 		10
(-1.9)
P 		15.6
(2.7)
P 		16
(3)
P 		8.7
(-3)
A 		7
B 13.3
(-0)
P 		13.4
(-0)
P 		8.5
(-2.2)
A 		6.7
(-3)
A 		20.1
(3)
P 		12.3
(-0.5)
A 		13
C 11.6
(-0.3)
A 		20.6
(3)
P 		17.3
(1.8)
P 		4.4
(-3)
A 		12.5
(-0)
A 		14.6
(0.8)
A 		16
avr 12.1
(-0.4) 		16.2
(3) 		11.9
(-0.5) 		8.9
(-3) 		16.2
(3) 		11.9
(-0.5) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179279_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13286
Sequence Type Exemplar sequence
Representative Public ID T03F7.3 NCBI
Target Description T03F7.3 /REP_DB=WormBase Gene ID /WP=CE06346 /TR=Q22114 /GB=CAA98517.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073470(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073470 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-46) (srh-46) mRNA, complete cds. 11/11 None
GENEFINDER00000015859 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11299284:11307567:-1 11/11 None
T03F7.3 ENSEMBL cdna:known chromosome:CEL140:V:11304195:11305474:-1 gene:T03F7.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11304194-11304990(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srh-46
Ensembl T03F7.3
Entrez Gene 188025 Entrez gene
SwissProt Q22114 EMBL-EBI
WormBase CE36009 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98517 Hypothetical protein T03F7.3 [Caenorhabditis elegans] ref|NP_505871.2| Serpentine Receptor, class H family member (srh-46) [Caenorhabditis elegans] 0.0
blast CAE75216 Hypothetical protein CBG23165 [Caenorhabditis briggsae] 1.0E-162
blast CAA98518 Hypothetical protein T03F7.4 [Caenorhabditis elegans] ref|NP_505870.2| Serpentine Receptor, class H family member (srh-47) [Caenorhabditis elegans] 1.0E-145
blast CAA98517 Hypothetical protein T03F7.3 [Caenorhabditis elegans] ref|NP_505871.2| Serpentine Receptor, class H family member (srh-46) [Caenorhabditis elegans] 1.0E-143
blast CAE75216 Hypothetical protein CBG23165 [Caenorhabditis briggsae] 1.0E-121
blast CAA98518 Hypothetical protein T03F7.4 [Caenorhabditis elegans] ref|NP_505870.2| Serpentine Receptor, class H family member (srh-47) [Caenorhabditis elegans] 1.0E-109
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.8E-58
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 3.9E-13
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.3E-117
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.2E-59
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505871.2 7 20-42,63-85,100-122,145-164,203-225,246-268,283-305
T03F7.3 7 20-42,63-85,100-122,145-164,203-225,246-268,283-305
GENEFINDER00000015859 14 36-58,71-93,98-120,127-149,209-231,339-361,381-403,416-438,524-546,565-587,597-619,626-648,709-731,764-786
Sequence
Target Sequence 
>C. ELEGANS:179279_AT
ctatcaatttggtgtttccctgggtagcttcaacaatttctttgcttcgtattccaaatc
aaacttgggcaaaacttgaacttctaaagacaattccatgtccaagtgcagaattctttc
aacttcccataattatagtgactacggaggcaaaatcaattggtttagcactacttgctc
ttgtattgttttatgcaattcaaattctagtatttataattcactcttcactctatcttt
gcatttcaacaaaatcgttctcaatgtctgaaaagacaaaaaagttgaaaagaaaatatt
ttatagcagtttgtgttcaagtattcatcccttttgtaattatggcagttccagtaaact
actactcattttctattatcaccgactactataatcaatcagccaacaatttttgctttt
taattatgagtcttcatgggttcttctccacaattgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTATCAATTTGGTGTTTCCCTGGGT 492 1 140 Antisense
TTCCCTGGGTAGCTTCAACAATTTC 658 689 155 Antisense
AACAATTTCTTTGCTTCGTATTCCA 681 119 171 Antisense
GTGCAGAATTCTTTCAACTTCCCAT 401 481 245 Antisense
AGCACTACTTGCTCTTGTATTGTTT 406 77 306 Antisense
TTATAATTCACTCTTCACTCTATCT 365 679 353 Antisense
CTTCACTCTATCTTTGCATTTCAAC 501 221 365 Antisense
GTGTTCAAGTATTCATCCCTTTTGT 362 485 452 Antisense
GGCAGTTCCAGTAAACTACTACTCA 217 537 483 Antisense
TACTACTCATTTTCTATTATCACCG 109 647 499 Antisense
TTCATGGGTTCTTCTCCACAATTGC 220 687 572 Antisense
Sequence Source Affymetrix Proprietary Database