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[179277_at]

Description F15D4.3 /REP_DB=WormBase Gene ID /WP=CE23658 /TR=Q93511 /GB=CAB02486.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 91      4grp_highest_8_8 > 30      4grp_high_8_8 > 04      6grp_total > 53      4grp_total > 05      6grp_cgc > 90      6grp_high1_sub > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 166
1 2 3 4 range
A 99
(0.4)
P 		38.7
(-3)
P 		108.5
(0.9)
P 		145
(3)
P 		106
B 59.7
(-0.2)
P 		29.4
(-3)
P 		34.5
(-2.5)
P 		94.9
(3)
P 		66
C 82.8
(-1.1)
P 		64.8
(-1.8)
P 		32.2
(-3)
P 		195.2
(3)
P 		163
avr 80.5
(-0.8) 		44.3
(-3) 		58.4
(-2.2) 		145
(3) 		101

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 89.6
(2.7)
A 		59.3
(-0.9)
P 		84
(2)
P 		41.4
(-3)
P 		92.1
(3)
P 		77.1
(1.2)
A 		51
B 66
(1)
P 		56.8
(-0.2)
P 		53.5
(-0.6)
A 		50.5
(-1)
M 		81.6
(3)
P 		35.3
(-3)
P 		46
C 36.2
(-3)
P 		64.1
(0.3)
A 		83.1
(2.6)
P 		86.4
(3)
P 		49.8
(-1.4)
A 		62.7
(0.2)
P 		50
avr 63.9
(-1) 		60.1
(-2.4) 		73.5
(2.6) 		59.4
(-2.6) 		74.5
(3) 		58.4
(-3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 36.1
(3)
P 		8.4
(-3)
P 		28.4
(1.3)
P 		21.2
(-0.2)
P 		28
B 19.1
(2.5)
P 		7.3
(-3)
P 		8
(-2.7)
P 		20.2
(3)
P 		13
C 27.4
(1.5)
P 		18.6
(-1)
P 		11.2
(-3)
P 		32.9
(3)
P 		22
avr 27.5
(3) 		11.4
(-3) 		15.9
(-1.3) 		24.8
(2) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 16.5
(-0.9)
A 		21.1
(0.7)
P 		18.3
(-0.3)
P 		10.5
(-3)
P 		27.8
(3)
P 		18.8
(-0.1)
A 		17
B 23
(-0)
P 		18.9
(-1.2)
P 		13
(-3)
A 		13.4
(-2.9)
M 		33.1
(3)
P 		13.2
(-2.9)
P 		20
C 13.4
(-3)
P 		19.6
(1.8)
A 		21.2
(3)
P 		17.4
(0.1)
P 		16.1
(-0.9)
A 		21
(2.8)
P 		8
avr 17.6
(-1.1) 		19.9
(0.1) 		17.5
(-1.1) 		13.8
(-3) 		25.7
(3) 		17.7
(-1) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179277_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3196
Sequence Type Exemplar sequence
Representative Public ID F15D4.3 NCBI
Target Description F15D4.3 /REP_DB=WormBase Gene ID /WP=CE23658 /TR=Q93511 /GB=CAB02486.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064403
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000038515 ENSEMBL cdna:SNAP chromosome:CEL140:II:13237423:13242889:-1 None
GENEFINDER00000038527 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13237423:13237802:-1 None
F15D4.3 ENSEMBL cdna:known chromosome:CEL140:II:13237133:13237802:-1 gene:F15D4.3 A 
NM_064403 NCBI Caenorhabditis elegans F15D4.3 (F15D4.3) mRNA, complete cds. A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13237414-13237799(-) 57.31 57.31
Public Domain and Genome References
Gene Title
Ensembl F15D4.3
Entrez Gene 174968 Entrez gene
SwissProt Q93511 EMBL-EBI
WormBase CE37223 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02487 Hypothetical protein F15D4.4 [Caenorhabditis elegans] ref|NP_496805.2| F15D4.4 [Caenorhabditis elegans] 0.0
blast CAE59447 Hypothetical protein CBG02822 [Caenorhabditis briggsae] 1.0E-166
blast BAA14402.1 unnamed protein product [Oryza sativa (japonica cultivar-group)] sp|P25776|ORYA_ORYSA Oryzain alpha chain precursor 6.0E-31
blast CAB02486 Hypothetical protein F15D4.3 [Caenorhabditis elegans] ref|NP_496804.2| F15D4.3 [Caenorhabditis elegans] 2.0E-21
blast CAE59446 Hypothetical protein CBG02821 [Caenorhabditis briggsae] 7.0E-17
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496804.2 1 24-46
F15D4.3 1 24-46
SNAP00000038515 1 486-508
GENEFINDER00000038527 1 24-46
Sequence
Target Sequence 
>C. ELEGANS:179277_AT
atgccagttccttcaggatatgcagcacacccacaaggaagccaaccgtcgtgttttaca
aagattcgaatgggattaatgatgggagcaatgattggcggagcaacaggcattcttctc
ggcggattcatgggcttcagagctggcatgcgaggcaaggatcttctcctacaaaccggc
aaaactgtggcacaatccggcggatcattcggcgtcttcatgggtgttgcccagggtctt
cgctatatcttttttaaaaatttagcaggcacgggattctggcctttctcattgaatttt
tcgcgctccattgacaattgcccgcgtgggaaagtcgtgtactccacacggacaaatgca
tttcgttttacaactgaaatcgagaaaaaagagccgcgacgcgata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCCAGTTCCTTCAGGATATGCAG 394 41 13 Antisense
GTTCCTTCAGGATATGCAGCACACC 576 441 19 Antisense
TCAGGATATGCAGCACACCCACAAG 568 621 25 Antisense
AAAAATTTAGCAGGCACGGGATTCT 525 129 268 Antisense
TAGCAGGCACGGGATTCTGGCCTTT 469 651 275 Antisense
GGATTCTGGCCTTTCTCATTGAATT 469 509 286 Antisense
CATTGACAATTGCCCGCGTGGGAAA 606 215 321 Antisense
GACAATTGCCCGCGTGGGAAAGTCG 101 363 325 Antisense
AAATGCATTTCGTTTTACAACTGAA 32 121 366 Antisense
TCGTTTTACAACTGAAATCGAGAAA 419 505 375 Antisense
GAGAAAAAAGAGCCGCGACGCGATA 1 393 394 Antisense
Sequence Source Affymetrix Proprietary Database