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[179276_s_at]

Description F31E9.1 /REP_DB=WormBase Gene ID /WP=CE15935 /TR=O45425 /GB=CAB07198.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 85      6grp_total > 86      4grp_total > 03      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 197
1 2 3 4 range
A 27.5
(-3)
A
27.1
(-3)
A
40
(-2.6)
A
201.5
(3)
P
174
B 32.7
(-1.7)
A
11.3
(-2.7)
A
4.5
(-3)
A
139.5
(3)
P
135
C 39.5
(-2.1)
M
16.3
(-3)
A
29.9
(-2.5)
A
170.3
(3)
P
154
avr 33.2
(-2.4)
18.2
(-3)
24.8
(-2.7)
170.4
(3)
152

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 29.7
(-3)
A
62.4
(0.3)
M
89.1
(3)
P
84.5
(2.5)
A
68.4
(0.9)
A
82.7
(2.4)
A
59
B 31.3
(-3)
P
59.1
(-1.5)
P
85.9
(0)
P
56.2
(-1.6)
P
101.6
(0.9)
P
139.9
(3)
P
109
C 26.2
(-3)
A
59
(-0.4)
P
59
(-0.4)
A
45.1
(-1.5)
A
82.9
(1.5)
P
101.8
(3)
P
76
avr 29.1
(-3)
60.2
(-0.6)
78
(0.7)
61.9
(-0.5)
84.3
(1.2)
108.1
(3)
79
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 10
(-2)
A
5.9
(-3)
A
10.4
(-1.9)
A
29.5
(3)
P
24
B 10.4
(-1)
A
2.8
(-2.6)
A
1.1
(-3)
A
29.7
(3)
P
29
C 13.1
(-0.9)
M
4.7
(-3)
A
10.4
(-1.6)
A
28.7
(3)
P
24
avr 11.2
(-1.4)
4.5
(-3)
7.3
(-2.3)
29.3
(3)
25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 5.5
(-3)
A
22.2
(3)
M
19.4
(2)
P
21.4
(2.7)
A
20.6
(2.4)
A
20.1
(2.2)
A
17
B 10.9
(-3)
P
19.7
(-1.7)
P
20.9
(-1.5)
P
14.9
(-2.4)
P
41.3
(1.4)
P
52.2
(3)
P
41
C 9.7
(-2.9)
A
18
(-0.9)
P
15
(-1.6)
A
9.1
(-3)
A
26.8
(1.2)
P
34.1
(3)
P
25
avr 8.7
(-3)
20
(-0.5)
18.4
(-0.8)
15.1
(-1.6)
29.6
(1.7)
35.5
(3)
27
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179276_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13676
Sequence Type Exemplar sequence
Representative Public ID F31E9.1 NCBI
Target Description F31E9.1 /REP_DB=WormBase Gene ID /WP=CE15935 /TR=O45425 /GB=CAB07198.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074983(11), NM_075043(11)
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
NM_074983 NCBI Caenorhabditis elegans F31E9.1 (F31E9.1) mRNA, complete cds. 11/11 A 
NM_075043 NCBI Caenorhabditis elegans C18D4.8 (C18D4.8) mRNA, complete cds. 11/11 A 
GENEFINDER00000019858 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17546751:17549369:-1 11/11 None
SNAP00000027113 ENSEMBL cdna:SNAP chromosome:CEL140:V:17322173:17325021:-1 11/11 None
GENEFINDER00000027116 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17322173:17325021:-1 11/11 None
F31E9.1 ENSEMBL cdna:known chromosome:CEL140:V:17322173:17325021:-1 gene:F31E9.1 11/11 A 
C18D4.8 ENSEMBL cdna:known chromosome:CEL140:V:17546751:17549561:-1 gene:C18D4.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17322172-17325021(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl F31E9.1
C18D4.8
Entrez Gene 180156 Entrez gene
185158 Entrez gene
SwissProt O45265 EMBL-EBI
O45425 EMBL-EBI
WormBase CE31882 Wormbase
CE15935 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07198 Hypothetical protein F31E9.1 [Caenorhabditis elegans] ref|NP_507384.1| F31E9.1 [Caenorhabditis elegans] 0.0
blast CAD54126 Hypothetical protein C18D4.8 [Caenorhabditis elegans] emb|CAB03905.2| Hypothetical protein C18D4.8 [Caenorhabditis elegans] ref|NP_507444.2| C18D4.8 [Caenorhabditis elegans] 0.0
blast CAD54126 Hypothetical protein C18D4.8 [Caenorhabditis elegans] emb|CAB03905.2| Hypothetical protein C18D4.8 [Caenorhabditis elegans] ref|NP_507444.2| C18D4.8 [Caenorhabditis elegans] 1.0E-130
blast CAB07198 Hypothetical protein F31E9.1 [Caenorhabditis elegans] ref|NP_507384.1| F31E9.1 [Caenorhabditis elegans] 1.0E-130
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 8.5E-27
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.4E-8
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 7.9E-8
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 7.7E-4
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 6.2E-11
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 7.9E-8
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 7.7E-4
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 8.5E-27
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 8.5E-27
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.4E-8
Sequence
Target Sequence
>C. ELEGANS:179276_S_AT
ttgcacagggaacttttgagctagaatcttgtctttgttccgatgctgtttcacgtctta
gatttccgcaaagagtcatcaacatgattttaagcaaagctcgacctattgacaggttcg
tattgtggaaagtgtctggaggattccaacccaacattctttccggcgtccaaaatttcc
gtgttctcattcataatcgttctgttagacttgaaatggaccaggatagtgttaaatata
aggatgaagaaatcgctcaaagtgacgcgaatgtaaaaatcgaaaaggagaaatccaata
cctggcaggtttcgggcggcaatctcgccatgacacttaatgatttgaaactgatgttgg
acggctcggaacttcagttcagcacattcaaactcgaggtcgatcagtttctaccgttca
aatttgattttaacgattatatgaaagagggaaagaatatgccgcgttggaaaattgtaa
agaacgcatttgattcaatgaactgtgtaccagcgaattgtgtggatggat


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
TTGCACAGGGAACTTTTGAGCTAGA 471 701 1334 Antisense
TTGAGCTAGAATCTTGTCTTTGTTC 588 705 1349 Antisense
ATTTCCGCAAAGAGTCATCAACATG 236 17 1395 Antisense
GACAGGTTCGTATTGTGGAAAGTGT 284 369 1444 Antisense
GTTCAGCACATTCAAACTCGAGGTC 199 443 1710 Antisense
AGCACATTCAAACTCGAGGTCGATC 688 75 1714 Antisense
TTCAAACTCGAGGTCGATCAGTTTC 202 685 1720 Antisense
AGAATATGCCGCGTTGGAAAATTGT 517 75 1787 Antisense
GAACGCATTTGATTCAATGAACTGT 397 347 1815 Antisense
GATTCAATGAACTGTGTACCAGCGA 106 425 1825 Antisense
GTACCAGCGAATTGTGTGGATGGAT 179 457 1840 Antisense
Sequence Source Affymetrix Proprietary Database