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[179275_at]

Description F31E9.1 /REP_DB=WormBase Gene ID /WP=CE15935 /TR=O45425 /GB=CAB07198.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 86      4grp_total > 03      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 4.1
(-3)
A 		15.5
(0.5)
A 		14.8
(0.3)
A 		23.4
(3)
A 		19
B 4.1
(-3)
A 		5.9
(-2.8)
A 		4.3
(-3)
A 		59.2
(3)
A 		55
C 28.7
(-1.5)
A 		4.3
(-3)
A 		4
(-3)
A 		105.7
(3)
P 		102
avr 12.3
(-2.5) 		8.6
(-2.9) 		7.7
(-3) 		62.8
(3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 6
(-2.9)
A 		25.9
(-1.6)
A 		4.1
(-3)
A 		63.7
(0.9)
A 		59.9
(0.6)
A 		96.1
(3)
P 		92
B 4.7
(-3)
A 		38.1
(-0.8)
A 		28.4
(-1.4)
A 		54.3
(0.3)
A 		23.5
(-1.8)
A 		95
(3)
P 		90
C 3.2
(-3)
A 		21.8
(-1.7)
A 		39.7
(-0.4)
A 		25.8
(-1.4)
A 		53.7
(0.5)
A 		88.7
(3)
P 		86
avr 4.6
(-3) 		28.6
(-1.4) 		24.1
(-1.7) 		47.9
(-0.1) 		45.7
(-0.2) 		93.3
(3) 		89
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 1.5
(-3)
A 		3.4
(1.8)
A 		3.9
(3)
A 		3.4
(1.8)
A 		2
B 1.3
(-2.8)
A 		1.5
(-2.7)
A 		1
(-3)
A 		12.6
(3)
A 		12
C 9.5
(0)
A 		1.2
(-3)
A 		1.4
(-2.9)
A 		17.8
(3)
P 		17
avr 4.1
(-1.6) 		2
(-3) 		2.1
(-2.9) 		11.3
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 1.1
(-2.9)
A 		9.2
(-0.8)
A 		0.9
(-3)
A 		16.2
(1.1)
A 		18.1
(1.6)
A 		23.4
(3)
P 		23
B 1.6
(-3)
A 		12.7
(-1)
A 		6.9
(-2.1)
A 		14.4
(-0.7)
A 		9.6
(-1.6)
A 		35.4
(3)
P 		34
C 1.2
(-3)
A 		6.7
(-1.8)
A 		10.1
(-1.1)
A 		5.2
(-2.2)
A 		17.4
(0.4)
A 		29.7
(3)
P 		29
avr 1.3
(-3) 		9.5
(-1.3) 		6
(-2) 		11.9
(-0.7) 		15
(-0.1) 		29.5
(3) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179275_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13676
Sequence Type Exemplar sequence
Representative Public ID F31E9.1 NCBI
Target Description F31E9.1 /REP_DB=WormBase Gene ID /WP=CE15935 /TR=O45425 /GB=CAB07198.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074983(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074983 NCBI Caenorhabditis elegans F31E9.1 (F31E9.1) mRNA, complete cds. 11/11 A 
SNAP00000027113 ENSEMBL cdna:SNAP chromosome:CEL140:V:17322173:17325021:-1 11/11 None
GENEFINDER00000027116 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17322173:17325021:-1 11/11 None
F31E9.1 ENSEMBL cdna:known chromosome:CEL140:V:17322173:17325021:-1 gene:F31E9.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17322172-17325021(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F31E9.1
Entrez Gene 185158 Entrez gene
SwissProt O45425 EMBL-EBI
WormBase CE15935 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07198 Hypothetical protein F31E9.1 [Caenorhabditis elegans] ref|NP_507384.1| F31E9.1 [Caenorhabditis elegans] 0.0
blast CAD54126 Hypothetical protein C18D4.8 [Caenorhabditis elegans] emb|CAB03905.2| Hypothetical protein C18D4.8 [Caenorhabditis elegans] ref|NP_507444.2| C18D4.8 [Caenorhabditis elegans] 1.0E-130
blast CAB05520 Hypothetical protein F44G3.8 [Caenorhabditis elegans] ref|NP_507061.1| F44G3.8 [Caenorhabditis elegans] 7.0E-21
blast CAA21768 Hypothetical protein T09F5.11 [Caenorhabditis elegans] emb|CAB05812.2| Hypothetical protein T09F5.11 [Caenorhabditis elegans] ref|NP_506746.1| T09F5.11 [Caenorhabditis elegans] 4.0E-19
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 8.5E-27
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.4E-8
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 8.5E-27
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 8.5E-27
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.4E-8
Sequence
Target Sequence 
>C. ELEGANS:179275_AT
ctatgggttaccgcgagttcgagttttggagccaagaaattgcacagggaacttttgagc
tagaatcttgtctttgttccgatgctgtttcacgtcttagatttccgcaaagagtcatca
acatgattttaagcaaagctcgacctattgacaggttcgtattgtggaaagtgtctggag
gattccaacccaacattctttccggcgtccaaaatttccgtgttctcattcataatcgtt
ctgttagacttgaaatggaccaggatagtgttaaatataaggatgaagaaatcgctcaaa
gtgacgcgaatgtaaaaatcgaaaaggagaaatccaatacctggcaggtttcgggcggca
atctcgccatgacacttaatgatttgaaactgatgttggacggctcggaacttcagttca
gcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTATGGGTTACCGCGAGTTCGAGTT 111 1 1295 Antisense
TCTTTGTTCCGATGCTGTTTCACGT 571 615 1365 Antisense
GTTTCACGTCTTAGATTTCCGCAAA 599 449 1381 Antisense
TAAGCAAAGCTCGACCTATTGACAG 601 627 1424 Antisense
TGGAGGATTCCAACCCAACATTCTT 208 549 1470 Antisense
TCCAAAATTTCCGTGTTCTCATTCA 19 589 1502 Antisense
GTTCTCATTCATAATCGTTCTGTTA 528 443 1516 Antisense
GAGAAATCCAATACCTGGCAGGTTT 440 393 1621 Antisense
GCAATCTCGCCATGACACTTAATGA 206 323 1652 Antisense
GAAACTGATGTTGGACGGCTCGGAA 675 357 1680 Antisense
ACGGCTCGGAACTTCAGTTCAGCAC 86 97 1694 Antisense
Sequence Source Affymetrix Proprietary Database