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[179274_at]

Description T04F8.6 /REP_DB=WormBase Gene ID /WP=CE03618 /TR=Q22167 /GB=CAA91482.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 52      6grp_high1_10_10 > 25      4grp_highest_8_8 > 41      4grp_high_8_8 > 42      6grp_highest_nonorm > 61      6grp_total > 26      4grp_total > 53      6grp_highest_sub > 01_02      6grp_high1_sub > 01_02      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 370.1
(3)
P 		369.4
(2.9)
P 		332.3
(-0.8)
P 		311
(-3)
P 		59
B 380.6
(3)
P 		370.8
(2.1)
P 		318.1
(-2.9)
P 		316.5
(-3)
P 		64
C 394.4
(3)
P 		297
(-1.6)
P 		359.5
(1.4)
P 		266.4
(-3)
P 		128
avr 381.7
(3) 		345.7
(0.4) 		336.6
(-0.2) 		298
(-3) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 306
1 2 3 4 5 6 range
A 477.1
(2.8)
P 		482.1
(3)
P 		349.9
(-3)
P 		352.5
(-2.9)
P 		395.7
(-0.9)
P 		361.2
(-2.5)
P 		132
B 500.8
(3)
P 		474.1
(2.1)
P 		406.5
(-0.1)
P 		457.5
(1.6)
P 		316.4
(-3)
P 		405.7
(-0.1)
P 		184
C 495.5
(1)
P 		597.4
(3)
P 		349.5
(-1.9)
P 		408.2
(-0.7)
P 		291.4
(-3)
P 		403.2
(-0.8)
P 		306
avr 491.1
(2.1) 		517.9
(3) 		368.6
(-1.9) 		406.1
(-0.7) 		334.5
(-3) 		390
(-1.2) 		183
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 134.8
(3)
P 		80.2
(-0.7)
P 		86.9
(-0.2)
P 		45.5
(-3)
P 		89
B 121.4
(3)
P 		91.6
(-0.3)
P 		73.7
(-2.3)
P 		67.5
(-3)
P 		54
C 130.6
(3)
P 		85.4
(-0.2)
P 		125.3
(2.6)
P 		44.9
(-3)
P 		86
avr 128.9
(3) 		85.7
(-0.4) 		95.3
(0.4) 		52.6
(-3) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 87.9
(-2.3)
P 		171.4
(3)
P 		76.2
(-3)
P 		89.4
(-2.2)
P 		119.4
(-0.3)
P 		87.9
(-2.3)
P 		95
B 174.3
(3)
P 		157.8
(1.7)
P 		98.7
(-3)
P 		121.2
(-1.2)
P 		128.6
(-0.6)
P 		151.3
(1.2)
P 		76
C 183.7
(3)
P 		182.3
(2.9)
P 		89
(-2.6)
P 		82.1
(-3)
P 		94.3
(-2.3)
P 		135
(0.1)
P 		102
avr 148.6
(1.4) 		170.5
(3) 		88
(-3) 		97.6
(-2.3) 		114.1
(-1.1) 		124.7
(-0.3) 		83
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179274_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16928
Sequence Type Exemplar sequence
Representative Public ID T04F8.6 NCBI
Target Description T04F8.6 /REP_DB=WormBase Gene ID /WP=CE03618 /TR=Q22167 /GB=CAA91482.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077549(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077549 NCBI Caenorhabditis elegans T04F8.6 (T04F8.6) mRNA, complete cds. 11/11 None
SNAP00000020402 ENSEMBL cdna:SNAP chromosome:CEL140:X:11667080:11671673:1 9/11 None
GENEFINDER00000020415 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11667080:11671846:1 11/11 None
T04F8.6 ENSEMBL cdna:known chromosome:CEL140:X:11667080:11672222:1 gene:T04F8.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11667079-11671846(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T04F8.6
Entrez Gene 181354 Entrez gene
SwissProt Q22167 EMBL-EBI
WormBase CE37403 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91482 Hypothetical protein T04F8.6 [Caenorhabditis elegans] ref|NP_509950.2| T04F8.6 [Caenorhabditis elegans] 0.0
blast CAE70598 Hypothetical protein CBG17272 [Caenorhabditis briggsae] 1.0E-165
blast CAE70598 Hypothetical protein CBG17272 [Caenorhabditis briggsae] 1.0E-145
blast CAE70598 Hypothetical protein CBG17272 [Caenorhabditis briggsae] 1.0E-130
blast NP_997087 hypothetical protein LOC78177 [Mus musculus] gb|AAH67071.1| RIKEN cDNA 4930519N13 [Mus musculus] 5.0E-10
Sequence
Target Sequence 
>C. ELEGANS:179274_AT
aaaagtccacaaccgcatttgacgaattgccacatgtgaatgactacgaaattgaaataa
agaacgccgaagaatcatcttctcggttgtactctttgttcgagaggtataagatcaacg
acacggaatcgaaatctccgagatcgcatggcctagagaagaacggctctgtcaatcgag
tagcgacaagcttttgtgcaagatgcgtaaaagttgaaccgaaaattaatgagttgaata
tcattgttggaggttcagttaagaatatgactgttgaagatcctgttccgacaatcatga
accacgatcacctccatacagaagtaggtcggctgaaagctcggttaacatctgtcagat
gtaaagttgctgagataacagcagtaatggcccttccgttaacatcatctcgccatcact
tgatgccatccaccgatttccagtcatcaaagtcgcaaccatttgcaatgcgaaaccaac
gttcatttgccgatcttcgcgaacgaacacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAAGTCCACAACCGCATTTGACGA 262 133 1304 Antisense
TCTTCTCGGTTGTACTCTTTGTTCG 412 615 1381 Antisense
GACTGTTGAAGATCCTGTTCCGACA 391 375 1572 Antisense
GACAATCATGAACCACGATCACCTC 72 365 1593 Antisense
CACGATCACCTCCATACAGAAGTAG 693 197 1606 Antisense
GAAAGCTCGGTTAACATCTGTCAGA 577 359 1638 Antisense
TAACAGCAGTAATGGCCCTTCCGTT 249 639 1679 Antisense
TCATCTCGCCATCACTTGATGCCAT 130 621 1708 Antisense
ACCGATTTCCAGTCATCAAAGTCGC 366 89 1735 Antisense
AAACCAACGTTCATTTGCCGATCTT 122 125 1776 Antisense
TGCCGATCTTCGCGAACGAACACCA 210 585 1791 Antisense
Sequence Source Affymetrix Proprietary Database