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[179273_at]

Description C04B4.2 /REP_DB=WormBase Gene ID /WP=CE05204 /TR=Q17620 /GB=CAA93527.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 34      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 18.7
(-3)
A 		39.7
(3)
A 		23.3
(-1.7)
A 		26
(-0.9)
A 		21
B 15.7
(-3)
A 		48.2
(3)
A 		44.7
(2.4)
A 		21
(-2)
A 		33
C 41.2
(-1.6)
A 		75.7
(3)
A 		30.8
(-3)
A 		73.6
(2.7)
A 		45
avr 25.2
(-3) 		54.5
(3) 		32.9
(-1.4) 		40.2
(0.1) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 412
1 2 3 4 5 6 range
A 9.9
(-3)
A 		19.2
(-2.8)
A 		64.4
(-2)
A 		42.9
(-2.4)
A 		201.7
(0.7)
M 		323.3
(3)
P 		313
B 6.7
(-3)
A 		23.6
(-2.7)
A 		44.1
(-2.4)
A 		55.9
(-2.2)
A 		172.1
(-0.3)
P 		370.4
(3)
P 		364
C 8.1
(-3)
A 		30.3
(-2.7)
A 		9.7
(-3)
A 		35.3
(-2.6)
A 		162.2
(-0.7)
P 		418.4
(3)
P 		410
avr 8.2
(-3) 		24.4
(-2.7) 		39.4
(-2.5) 		44.7
(-2.4) 		178.7
(-0.2) 		370.7
(3) 		363
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 6.8
(0.8)
A 		8.6
(3)
A 		6.1
(-0.1)
A 		3.8
(-3)
A 		5
B 5
(-2.6)
A 		11.9
(3)
A 		10.3
(1.7)
A 		4.5
(-3)
A 		7
C 13.6
(-1.4)
A 		21.8
(3)
A 		10.7
(-3)
A 		12.4
(-2.1)
A 		11
avr 8.5
(-1.7) 		14.1
(3) 		9
(-1.3) 		6.9
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 138
1 2 3 4 5 6 range
A 1.8
(-3)
A 		6.8
(-2.6)
A 		14
(-2)
A 		10.9
(-2.3)
A 		60.9
(1.6)
M 		78.7
(3)
P 		77
B 2.3
(-3)
A 		7.8
(-2.8)
A 		10.7
(-2.6)
A 		14.8
(-2.4)
A 		69.9
(-0)
P 		138.1
(3)
P 		136
C 3
(-3)
A 		9.2
(-2.7)
A 		2.5
(-3)
A 		7.1
(-2.8)
A 		52.5
(-0.8)
P 		140.1
(3)
P 		138
avr 2.4
(-3) 		7.9
(-2.7) 		9.1
(-2.7) 		10.9
(-2.6) 		61.1
(0) 		119
(3) 		117
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179273_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16985
Sequence Type Exemplar sequence
Representative Public ID C04B4.2 NCBI
Target Description C04B4.2 /REP_DB=WormBase Gene ID /WP=CE05204 /TR=Q17620 /GB=CAA93527.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077647(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077647 NCBI Caenorhabditis elegans C04B4.2 (C04B4.2) mRNA, complete cds. 11/11 None
SNAP00000029833 ENSEMBL cdna:SNAP chromosome:CEL140:X:12283242:12284875:1 11/11 None
GENEFINDER00000029839 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12283242:12284875:1 11/11 None
C04B4.2 ENSEMBL cdna:known chromosome:CEL140:X:12283242:12285113:1 gene:C04B4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12283241-12284875(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C04B4.2
Entrez Gene 181388 Entrez gene
SwissProt Q17620 EMBL-EBI
WormBase CE05204 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA93527 Hypothetical protein C04B4.2 [Caenorhabditis elegans] ref|NP_510048.1| C04B4.2 [Caenorhabditis elegans] 0.0
blast CAA93528 Hypothetical protein C04B4.4 [Caenorhabditis elegans] ref|NP_510051.1| C04B4.4 [Caenorhabditis elegans] 2.0E-65
blast CAE61435 Hypothetical protein CBG05318 [Caenorhabditis briggsae] 6.0E-43
Sequence
Target Sequence 
>C. ELEGANS:179273_AT
atctcacggtacctatgtttctgccaagagaaacttgccacatttcgactacatgtcctt
cttcgaaggaattgtgtgcaccgcaacaccacaacgacatcagaagagtaagcttctcaa
gcacccaccaggattgcaaattccactgttgaataccagagcacaagctcttgggcaggc
atccatgcatcagcaacagcaggaacacatttctaatccgtatcaaggatatcagccata
tttgcaccgtgaagatatgaccaatggaatgaagaagccaactgggactctgatcgatgg
agcaaaccaaaagcattgttttgggatgcaggtttcatcaccggaccggaatgctttcga
aaagccatcagtatttggccacacatggggtgatgtgatcgctttcaataagaactctgc
aaacttctcacgtggaatgcaatccaagagaagatacaatctctcctccatgttcagaaa
cctgaagtattctggattccgctcatcaattgactccacgtcaagctccgacgattctca
atccttggataattgctcgacttctggtgtga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTCACGGTACCTATGTTTCTGCC 147 33 828 Antisense
AAACTTGCCACATTTCGACTACATG 46 129 858 Antisense
TCTCAAGCACCCACCAGGATTGCAA 152 613 942 Antisense
TTGGGCAGGCATCCATGCATCAGCA 99 679 998 Antisense
GGATATCAGCCATATTTGCACCGTG 62 511 1054 Antisense
CAGGTTTCATCACCGGACCGGAATG 626 205 1156 Antisense
AACTCTGCAAACTTCTCACGTGGAA 141 141 1240 Antisense
CTCTCCTCCATGTTCAGAAACCTGA 522 231 1288 Antisense
TGGATTCCGCTCATCAATTGACTCC 473 551 1320 Antisense
CTCCGACGATTCTCAATCCTTGGAT 546 233 1353 Antisense
GATAATTGCTCGACTTCTGGTGTGA 160 423 1375 Antisense
Sequence Source Affymetrix Proprietary Database