[Home] | [Total List]

[179271_at]

Description C18D4.1 /REP_DB=WormBase Gene ID /WP=CE15631 /TR=O45266 /GB=CAB04562.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 66      4grp_total > 29      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 4.5
(-2.2)
A 		18
(2.5)
A 		2.1
(-3)
A 		19.6
(3)
A 		18
B 3.9
(0.6)
A 		5.2
(3)
A 		2
(-3)
A 		2.8
(-1.5)
A 		3
C 28.9
(3)
A 		2.8
(-3)
A 		5.6
(-2.4)
A 		7.2
(-2)
A 		26
avr 12.4
(3) 		8.7
(0.6) 		3.2
(-3) 		9.9
(1.4) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 2.2
(-2.9)
A 		8.6
(-2)
A 		1.9
(-3)
A 		2.1
(-2.9)
A 		1.7
(-3)
A 		44.3
(3)
A 		43
B 2.3
(-2.7)
A 		2.5
(-2.6)
A 		2.7
(-2.6)
A 		4.3
(-2.1)
A 		1.4
(-3)
A 		19.9
(3)
A 		19
C 1.8
(-2.9)
A 		24.9
(3)
A 		1.8
(-2.9)
A 		3.8
(-2.4)
A 		1.6
(-3)
A 		19.3
(1.6)
A 		23
avr 2.1
(-2.9) 		12
(-0.6) 		2.1
(-2.9) 		3.4
(-2.6) 		1.6
(-3) 		27.8
(3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.6
(-1.2)
A 		3.9
(3)
A 		0.6
(-3)
A 		2.9
(1.2)
A 		3
B 1.2
(2.3)
A 		1.3
(3)
A 		0.5
(-3)
A 		0.6
(-2.3)
A 		1
C 9.6
(3)
A 		0.8
(-3)
A 		1.9
(-2.3)
A 		1.2
(-2.7)
A 		9
avr 4.1
(3) 		2
(-1.1) 		1
(-3) 		1.6
(-1.8) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.4
(-3)
A 		3.1
(-1.4)
A 		0.4
(-3)
A 		0.5
(-2.9)
A 		0.5
(-2.9)
A 		10.8
(3)
A 		10
B 0.8
(-2.8)
A 		0.8
(-2.8)
A 		0.6
(-3)
A 		1.1
(-2.6)
A 		0.6
(-3)
A 		7.4
(3)
A 		7
C 0.7
(-2.8)
A 		7.6
(3)
A 		0.4
(-3)
A 		0.8
(-2.7)
A 		0.5
(-2.9)
A 		6.5
(2.1)
A 		7
avr 0.6
(-2.9) 		3.8
(-0.4) 		0.5
(-3) 		0.8
(-2.8) 		0.5
(-3) 		8.2
(3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179271_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13992
Sequence Type Exemplar sequence
Representative Public ID C18D4.1 NCBI
Target Description C18D4.1 /REP_DB=WormBase Gene ID /WP=CE15631 /TR=O45266 /GB=CAB04562.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075036(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075036 NCBI Caenorhabditis elegans C18D4.1 (C18D4.1) mRNA, complete cds. 11/11 None
SNAP00000019849 ENSEMBL cdna:SNAP chromosome:CEL140:V:17524220:17530039:1 11/11 None
GENEFINDER00000019857 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17524475:17530039:1 11/11 None
C18D4.1 ENSEMBL cdna:known chromosome:CEL140:V:17523738:17528277:1 gene:C18D4.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_075037 7/11 Cross Hyb Matching Probes None
C18D4.2.1 7/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17523915-17528277(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C18D4.1
Entrez Gene 180154 Entrez gene
SwissProt O45266 EMBL-EBI
WormBase CE15631 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04562 Hypothetical protein C18D4.1 [Caenorhabditis elegans] emb|CAB03907.1| Hypothetical protein C18D4.1 [Caenorhabditis elegans] ref|NP_507437.1| C18D4.1 [Caenorhabditis elegans] 0.0
blast CAB03900 Hypothetical protein C18D4.2 [Caenorhabditis elegans] ref|NP_507438.1| C18D4.2 [Caenorhabditis elegans] 0.0
blast CAB04362 Hypothetical protein F40D4.12 [Caenorhabditis elegans] ref|NP_507340.1| F40D4.12 [Caenorhabditis elegans] 6.0E-97
blast CAB04362 Hypothetical protein F40D4.12 [Caenorhabditis elegans] ref|NP_507340.1| F40D4.12 [Caenorhabditis elegans] 3.0E-81
blast CAB07255 Hypothetical protein K10G4.5 [Caenorhabditis elegans] ref|NP_507379.2| K10G4.5 [Caenorhabditis elegans] 4.0E-26
Protein Domains
Database ID Description E-Value
Pfam IPR003903 EMBL-EBI Ubiquitin interacting motif 9.9
Pfam IPR003903 EMBL-EBI Ubiquitin interacting motif 1.1
Pfam IPR003903 EMBL-EBI Ubiquitin interacting motif 1.1
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 6.0E-18
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 0.0012
Pfam IPR003903 EMBL-EBI Ubiquitin interacting motif 9.9
Pfam IPR003903 EMBL-EBI Ubiquitin interacting motif 1.1
Pfam IPR003903 EMBL-EBI Ubiquitin interacting motif 1.1
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.7E-29
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 0.0012
Pfam IPR003903 EMBL-EBI Ubiquitin interacting motif 9.9
Pfam IPR003903 EMBL-EBI Ubiquitin interacting motif 1.1
Pfam IPR003903 EMBL-EBI Ubiquitin interacting motif 1.1
Sequence
Target Sequence 
>C. ELEGANS:179271_AT
gaaagcccggaagacgatctaccttcgacttctgataaaaaaactccaacaagtcgaaaa
cgttcgcaattctctgaatcaaacattaacagcaagaggcataagtttgcaacaatgcag
tctctattagattcgaaagtctactcttcaaacaatggagcaagtccggaagacgatcta
ccttcgacttcccaaatcagatcttctacaatgcaaagacgttcggaaatctatcaacag
ggattgtcaaaattccacatgctactgtcgatggcagctgtgcattctgcattcgactcg
aggaatacatcaagcactgaagcggtgccggacaacgatccagattctgaagattctagg
agacacaaggaacatttccaaaatttgctcttaaacgtcaacaacatgatccgtcattca
agaattactcagaattcatcagattcgaaatccaattgcaagaaagaacagaccgggagt
agtcatcgagcgctaacgaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAGCCCGGAAGACGATCTACCTT 44 357 3376 Antisense
GAAAACGTTCGCAATTCTCTGAATC 237 355 3431 Antisense
GATTCGAAAGTCTACTCTTCAAACA 8 431 3505 Antisense
GTCCGGAAGACGATCTACCTTCGAC 254 473 3539 Antisense
TTCGACTTCCCAAATCAGATCTTCT 30 697 3558 Antisense
AATTCCACATGCTACTGTCGATGGC 703 177 3626 Antisense
CTGTCGATGGCAGCTGTGCATTCTG 627 239 3640 Antisense
TGCATTCTGCATTCGACTCGAGGAA 428 577 3656 Antisense
GTGCCGGACAACGATCCAGATTCTG 237 479 3700 Antisense
ACGTCAACAACATGATCCGTCATTC 355 95 3770 Antisense
GAGTAGTCATCGAGCGCTAACGAAC 12 399 3852 Antisense
Sequence Source Affymetrix Proprietary Database