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[179270_at]

Description R07E5.7 /REP_DB=WormBase Gene ID /WP=CE00672 /TR=Q21821 /GB=CAA83617.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 49      6grp_high1_10_10 > 94      4grp_highest_8_8 > 12      4grp_high_8_8 > 39      6grp_highest_nonorm > 58      6grp_total > 75      4grp_total > 32      6grp_highest_sub > 04_05_06      6grp_high1_sub > In      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1270
1 2 3 4 range
A 2155.9
(-2.7)
P 		3242.3
(3)
P 		2632.3
(-0.2)
P 		2105
(-3)
P 		1137
B 2472.3
(-3)
P 		2523
(-2.5)
P 		2935.6
(2)
P 		3032.4
(3)
P 		560
C 1972.2
(-3)
P 		1974
(-3)
P 		2676.6
(1.7)
P 		2879.5
(3)
P 		907
avr 2200.1
(-3) 		2579.8
(1.2) 		2748.2
(3) 		2672.3
(2.2) 		548

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1908
1 2 3 4 5 6 range
A 2137.4
(-3)
P 		2726.6
(0.7)
P 		2596.7
(-0.1)
P 		3086
(3)
P 		2393.8
(-1.4)
P 		3023.1
(2.6)
P 		949
B 1745.6
(-3)
P 		2486.2
(0.7)
P 		2193.1
(-0.8)
P 		2343.2
(0)
P 		2883.1
(2.7)
P 		2939.4
(3)
P 		1194
C 1858.6
(-3)
P 		2368.6
(-1.3)
P 		2873.5
(0.4)
P 		3653.5
(3)
P 		2396.4
(-1.2)
P 		3157.7
(1.3)
P 		1795
avr 1913.9
(-3) 		2527.1
(0.3) 		2554.4
(0.4) 		3027.6
(2.9) 		2557.8
(0.4) 		3040.1
(3) 		1126
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 625
1 2 3 4 range
A 785
(3)
P 		703.8
(2)
P 		688.1
(1.8)
P 		308.1
(-3)
P 		477
B 788.4
(3)
P 		623.1
(-3)
P 		680.3
(-0.9)
P 		646.2
(-2.2)
P 		165
C 652.8
(-0.8)
P 		567.6
(-1.9)
P 		932.9
(3)
P 		485.5
(-3)
P 		447
avr 742.1
(2.5) 		631.5
(0.2) 		767.1
(3) 		479.9
(-3) 		287

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 777
1 2 3 4 5 6 range
A 394
(-3)
P 		969.7
(3)
P 		565.5
(-1.2)
P 		782.7
(1.1)
P 		722.3
(0.4)
P 		736
(0.6)
P 		576
B 607.4
(-2.3)
P 		827.6
(-0.2)
P 		532.6
(-3)
P 		620.6
(-2.2)
P 		1171.4
(3)
P 		1096.1
(2.3)
P 		639
C 688.9
(-3)
P 		722.7
(-2.4)
P 		731.4
(-2.3)
P 		734.7
(-2.3)
P 		775.4
(-1.6)
P 		1057.1
(3)
P 		368
avr 563.4
(-3) 		840
(1.2) 		609.8
(-2.3) 		712.7
(-0.8) 		889.7
(1.9) 		963.1
(3) 		400
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179270_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8006
Sequence Type Exemplar sequence
Representative Public ID R07E5.7 NCBI
Target Description R07E5.7 /REP_DB=WormBase Gene ID /WP=CE00672 /TR=Q21821 /GB=CAA83617.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065497(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065497 NCBI Caenorhabditis elegans R07E5.7 (R07E5.7) mRNA, complete cds. 11/11 None
SNAP00000012854 ENSEMBL cdna:SNAP chromosome:CEL140:III:4418468:4419135:-1 11/11 None
GENEFINDER00000012858 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4418468:4419135:-1 11/11 None
R07E5.7.1 ENSEMBL cdna:known chromosome:CEL140:III:4418312:4419136:-1 gene:R07E5.7 11/11 None
R07E5.7.2 ENSEMBL cdna:known chromosome:CEL140:III:4418312:4419138:-1 gene:R07E5.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4418467-4419135(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R07E5.7
Entrez Gene 175577 Entrez gene
SwissProt Q21821 EMBL-EBI
WormBase CE00672 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA83617 Hypothetical protein R07E5.7 [Caenorhabditis elegans] ref|NP_497898.1| R07E5.7 [Caenorhabditis elegans] 7.0E-86
blast CAE71204 Hypothetical protein CBG18066 [Caenorhabditis briggsae] 8.0E-69
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497898.1 2 115-137,152-174
R07E5.7.1 2 115-137,152-174
R07E5.7.2 2 115-137,152-174
SNAP00000012854 2 115-137,152-174
GENEFINDER00000012858 2 115-137,152-174
Sequence
Target Sequence 
>C. ELEGANS:179270_AT
gacttcgagctgatcgacggagctgaacgaaaatccagcacttcagatagttttgaagct
gttgatgaaaagaaaaatggtagtcaatctgtcagtgaaaacgaggatgacaatgctgac
aaatcggcgaaagaggaagatgatgaagttgaagaggagatgaagcttccattcgttgat
cagtcaattaaagacgacgcaaatcggccgaaagagaaagacggtgaggacctagtagaa
gaggcactgaaagcaccgattcgacccgatcaagaacaattctacacagcagagcattcg
aatagagctataactctgctcatcgcattttctgcaatgatgttcacacttccactgctt
gttatggcaagcttgtattattgggtattcatcgaccacttccatttaccaccagcagaa
gccatgctttatgccggagtatgtgctgccttggtcgtaattctcattgctgccgctttc
tgttatattgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTTCGAGCTGATCGACGGAGCTG 170 371 40 Antisense
GAGGAGATGAAGCTTCCATTCGTTG 565 403 193 Antisense
AGGCACTGAAAGCACCGATTCGACC 620 53 281 Antisense
ATAACTCTGCTCATCGCATTTTCTG 383 25 349 Antisense
GCAATGATGTTCACACTTCCACTGC 122 323 373 Antisense
CACACTTCCACTGCTTGTTATGGCA 284 195 384 Antisense
ATTGGGTATTCATCGACCACTTCCA 271 3 419 Antisense
TTCCATTTACCACCAGCAGAAGCCA 34 699 439 Antisense
GAAGCCATGCTTTATGCCGGAGTAT 451 343 457 Antisense
GTATGTGCTGCCTTGGTCGTAATTC 363 455 478 Antisense
TTGCTGCCGCTTTCTGTTATATTGC 561 701 506 Antisense
Sequence Source Affymetrix Proprietary Database