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[179269_at]

Description W07G4.2 /REP_DB=WormBase Gene ID /WP=CE14686 /TR=Q23217 /GB=CAB01447.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 0      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 34.3
(-1.3)
A 		26.2
(-3)
A 		34.1
(-1.3)
A 		54.4
(3)
A 		28
B 32.9
(-1)
A 		26.1
(-2.1)
A 		20.4
(-3)
A 		58.2
(3)
A 		38
C 31.4
(-3)
A 		40.2
(-1.7)
A 		72.3
(3)
A 		64.8
(1.9)
A 		41
avr 32.9
(-2.6) 		30.8
(-3) 		42.3
(-0.6) 		59.1
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 190
1 2 3 4 5 6 range
A 73.8
(-1.8)
A 		38.2
(-3)
A 		80.2
(-1.6)
A 		218
(3)
P 		157.9
(1)
P 		57.1
(-2.4)
A 		180
B 46.5
(-2.2)
A 		28.5
(-3)
A 		101.9
(0.3)
P 		161.3
(3)
P 		117
(1)
P 		37.6
(-2.6)
A 		133
C 33.8
(-3)
A 		71.3
(-1.6)
A 		62.2
(-1.9)
A 		195.4
(3)
P 		40
(-2.8)
P 		44
(-2.6)
A 		162
avr 51.4
(-2.8) 		46
(-3) 		81.4
(-1.5) 		191.6
(3) 		105
(-0.6) 		46.2
(-3) 		146
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 12.5
(3)
A 		5.7
(-3)
A 		8.9
(-0.2)
A 		8
(-1)
A 		7
B 10.5
(1.5)
A 		6.4
(-1.7)
A 		4.7
(-3)
A 		12.4
(3)
A 		8
C 10.4
(-3)
A 		11.6
(-2.5)
A 		25.2
(3)
A 		10.9
(-2.8)
A 		15
avr 11.1
(0.8) 		7.9
(-3) 		12.9
(3) 		10.4
(0) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 13.6
(-3)
A 		13.6
(-3)
A 		17.5
(-2.4)
A 		55.3
(3)
P 		47.7
(1.9)
P 		13.9
(-3)
A 		42
B 16.2
(-1.9)
A 		9.5
(-3)
A 		24.7
(-0.6)
P 		42.7
(2.2)
P 		47.5
(3)
P 		14
(-2.3)
A 		38
C 12.5
(-3)
A 		21.7
(-0.9)
A 		15.8
(-2.3)
A 		39.3
(3)
P 		12.9
(-2.9)
P 		14.7
(-2.5)
A 		27
avr 14.1
(-3) 		14.9
(-2.8) 		19.3
(-2) 		45.8
(3) 		36
(1.1) 		14.2
(-3) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179269_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13347
Sequence Type Exemplar sequence
Representative Public ID W07G4.2 NCBI
Target Description W07G4.2 /REP_DB=WormBase Gene ID /WP=CE14686 /TR=Q23217 /GB=CAB01447.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073857(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073857 NCBI Caenorhabditis elegans W07G4.2 (W07G4.2) mRNA, complete cds. 11/11 None
W07G4.2 ENSEMBL cdna:known chromosome:CEL140:V:13036858:13039290:-1 gene:W07G4.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000014596 4/11 Cross Hyb Matching Probes None
GENEFINDER00000014607 7/11 Cross Hyb Matching Probes None
GENEFINDER00000014609 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13036857-13039290(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W07G4.2
Entrez Gene 189284 Entrez gene
SwissProt Q23217 EMBL-EBI
WormBase CE14686 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
5975 carbohydrate metabolism inferred from electronic annotation QuickGO AmiGO
16042 lipid catabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5794 Golgi apparatus inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4623 phospholipase A2 activity inferred from electronic annotation QuickGO AmiGO
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
8107 galactoside 2-alpha-L-fucosyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01447 Hypothetical protein W07G4.2 [Caenorhabditis elegans] ref|NP_506258.1| W07G4.2 [Caenorhabditis elegans] 0.0
blast AAB94261 Hypothetical protein C14C6.3 [Caenorhabditis elegans] ref|NP_503240.2| C14C6.3 [Caenorhabditis elegans] 1.0E-101
blast AAB70365 Hypothetical protein K06H6.6 [Caenorhabditis elegans] ref|NP_503253.1| K06H6.6 [Caenorhabditis elegans] 7.0E-96
Sequence
Target Sequence 
>C. ELEGANS:179269_AT
gcatcggatccgacttttgtcagacgggcggttgagtttattgaaaagaaaaaagcccta
gaaaatttaaaatctcgcattgtcttatttggagatgatttcaagtttatgaaatccatt
ttcaaatattcgattctccaaggttcaaacacaagacacttcatatctcataactctcca
tccgatgatttgatttattcaagagatcactgtgatacggttttaataagtgctcctcac
tcaacatttggctggtggatgggatatttctctaaaggaaatgaggttttctatatggat
ataagagaaaccaatgatttcagttttagaattggagagctgagcccatatgattatttt
atgccgaattggacaccactaaagttttcttgtgataatttaacgattgttgaaaaacaa
catcgaacttgttgcctcgcccatggttggtgttatgtatataaaaaggcaacaatggaa
gcatgtaataatgaatattgtcgttgtgttagtgttctcgcaaatgaaggtgtttgtaag
actcattctgataacttctgtatgaatgtgagaaacatgggaccaatgctctggccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATCGGATCCGACTTTTGTCAGAC 383 309 691 Antisense
AAATATTCGATTCTCCAAGGTTCAA 163 39 814 Antisense
GACACTTCATATCTCATAACTCTCC 434 367 845 Antisense
ATCTCATAACTCTCCATCCGATGAT 79 33 855 Antisense
TAATAAGTGCTCCTCACTCAACATT 538 635 914 Antisense
GGAGAGCTGAGCCCATATGATTATT 338 519 1024 Antisense
ATTTTATGCCGAATTGGACACCACT 79 15 1046 Antisense
ACAACATCGAACTTGTTGCCTCGCC 665 111 1107 Antisense
CCTCGCCCATGGTTGGTGTTATGTA 239 267 1125 Antisense
TTGTCGTTGTGTTAGTGTTCTCGCA 59 709 1188 Antisense
AAACATGGGACCAATGCTCTGGCCG 587 125 1263 Antisense
Sequence Source Affymetrix Proprietary Database