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[179268_s_at]

Description F15B9.5 /REP_DB=WormBase Gene ID /WP=CE09410 /TR=Q19476 /GB=CAB01420.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 85      6grp_high1_10_10 > 58      4grp_high_8_8 > 43      6grp_highest_nonorm > 82      6grp_total > 69      4grp_total > 52      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 210
1 2 3 4 range
A 283
(0.9)
P
355.7
(3)
P
256.1
(0.2)
P
145.6
(-3)
P
210
B 271.4
(2.6)
P
278.4
(3)
P
228.4
(-0.2)
P
183.7
(-3)
P
95
C 287.8
(2.1)
P
313.1
(3)
P
220.1
(-0.5)
P
151.8
(-3)
M
161
avr 280.7
(1.6)
315.7
(3)
234.9
(-0.1)
160.4
(-3)
155

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 275
1 2 3 4 5 6 range
A 385.9
(3)
P
359.4
(1.6)
P
325.9
(-0.2)
P
340.1
(0.5)
P
273.8
(-3)
P
366.1
(1.9)
P
112
B 435
(2.6)
P
265.1
(-1.8)
P
431.9
(2.5)
P
218.1
(-3)
P
396
(1.6)
P
450.7
(3)
P
233
C 309.5
(0.2)
P
316
(0.4)
P
342.8
(1)
P
176
(-3)
P
384
(2)
P
423.9
(3)
P
248
avr 376.8
(1.7)
313.5
(-0.6)
366.9
(1.3)
244.7
(-3)
351.3
(0.8)
413.6
(3)
169
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 103
(3)
P
77.2
(1.1)
P
66.9
(0.3)
P
21.3
(-3)
P
82
B 86.5
(3)
P
68.8
(0.8)
P
52.9
(-1.3)
P
39.2
(-3)
P
47
C 95.3
(3)
P
90
(2.5)
P
76.7
(1.4)
P
25.6
(-3)
M
70
avr 94.9
(3)
78.7
(1.5)
65.5
(0.3)
28.7
(-3)
66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 133
1 2 3 4 5 6 range
A 71.1
(-3)
P
127.8
(3)
P
71
(-3)
P
86.2
(-1.4)
P
82.6
(-1.8)
P
89.1
(-1.1)
P
57
B 151.4
(2.1)
P
88.2
(-1.3)
P
104.9
(-0.4)
P
57.8
(-3)
P
160.9
(2.6)
P
168.1
(3)
P
110
C 114.7
(1.5)
P
96.4
(0.4)
P
87.3
(-0.1)
P
35.4
(-3)
P
124.3
(2)
P
141.9
(3)
P
107
avr 112.4
(1.3)
104.1
(0.6)
87.7
(-0.7)
59.8
(-3)
122.6
(2.1)
133
(3)
73
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179268_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12689
Sequence Type Exemplar sequence
Representative Public ID F15B9.5 NCBI
Target Description F15B9.5 /REP_DB=WormBase Gene ID /WP=CE09410 /TR=Q19476 /GB=CAB01420.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073853(11)
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
NM_073853 NCBI Caenorhabditis elegans F15B9.5 (F15B9.5) mRNA, complete cds. 11/11 A 
SNAP00000032634 ENSEMBL cdna:SNAP chromosome:CEL140:V:13009712:13011509:-1 11/11 None
GENEFINDER00000032643 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13009712:13015366:-1 11/11 None
F15B9.5 ENSEMBL cdna:known chromosome:CEL140:V:13009572:13014224:-1 gene:F15B9.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13009711-13014224(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F15B9.5
Entrez Gene 179787 Entrez gene
SwissProt Q19476 EMBL-EBI
WormBase CE09410 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01420 Hypothetical protein F15B9.5 [Caenorhabditis elegans] ref|NP_506254.1| F15B9.5 [Caenorhabditis elegans] 0.0
blast CAE64694 Hypothetical protein CBG09476 [Caenorhabditis briggsae] 1.0E-170
blast CAE64694 Hypothetical protein CBG09476 [Caenorhabditis briggsae] 1.0E-165
blast CAB01420 Hypothetical protein F15B9.5 [Caenorhabditis elegans] ref|NP_506254.1| F15B9.5 [Caenorhabditis elegans] 1.0E-131
blast CAE64694 Hypothetical protein CBG09476 [Caenorhabditis briggsae] 1.0E-114
blast CAE63109 Hypothetical protein CBG07404 [Caenorhabditis briggsae] 4.0E-17
blast CAE63109 Hypothetical protein CBG07404 [Caenorhabditis briggsae] 6.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR001254 EMBL-EBI Peptidase S1, chymotrypsin 4.7E-19
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506254.1 2 130-147,349-371
F15B9.5 2 130-147,349-371
SNAP00000032634 1 222-244
GENEFINDER00000032643 1 542-564
Sequence
Target Sequence
>C. ELEGANS:179268_S_AT
aagcactcacaaacattctccaatcaacatgggacaaggctctatcgaaacaaggatctc
cgagacaaccagaccgtggaaatcaagggcccggatatcaaggtccaggatcaggaagtg
gtggaccaggtggattcaaacttccttcgatattacaatctaaatggctttggatttttg
tcattggtattgttcttccaacattgtgctgttgttgttgcatttattgttgctgttgcc
gtggacgaggtggtggtggtaatcagaatagacaacaggttccaactaatccaatgggcg
gaggtggtggctatccacaaccaccaccacagcaaggcggcggaggtggtggagcaggtg
gaatgttcagaaacattctatcatcaggtggcggagctgctgcaggatcaatgctcggac
gattcctttcgaatcgcggcggtggcggag


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
AAGCACTCACAAACATTCTCCAATC 555 151 893 Antisense
TCAACATGGGACAAGGCTCTATCGA 437 629 916 Antisense
ATCTCCGAGACAACCAGACCGTGGA 596 31 948 Antisense
AGGGCCCGGATATCAAGGTCCAGGA 8 11 978 Antisense
GACCAGGTGGATTCAAACTTCCTTC 409 383 1016 Antisense
GGTATTGTTCTTCCAACATTGTGCT 312 505 1078 Antisense
TTGCTGTTGCCGTGGACGAGGTGGT 683 699 1122 Antisense
GGAGGTGGTGGCTATCCACAACCAC 459 515 1192 Antisense
GAAACATTCTATCATCAGGTGGCGG 581 355 1262 Antisense
GTGGCGGAGCTGCTGCAGGATCAAT 292 491 1280 Antisense
CTTTCGAATCGCGGCGGTGGCGGAG 191 195 1318 Antisense
Sequence Source Affymetrix Proprietary Database