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[179267_at]

Description R10E8.5 /REP_DB=WormBase Gene ID /WP=CE18913 /TR=Q9XUR8 /GB=CAB04642.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 79      4grp_total > 56      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 4.2
(-2.8)
A 		3
(-3)
A 		32.8
(3)
A 		3.4
(-2.9)
A 		30
B 6
(0.6)
A 		8.1
(3)
A 		5.7
(0.3)
A 		2.8
(-3)
A 		5
C 6
(-2.2)
A 		6.9
(-1.6)
A 		13.4
(3)
A 		4.9
(-3)
A 		9
avr 5.4
(-2.3) 		6
(-2) 		17.3
(3) 		3.7
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 6.7
(0.2)
A 		2.2
(-2.9)
A 		4.6
(-1.2)
A 		2.6
(-2.6)
A 		2
(-3)
A 		10.7
(3)
A 		9
B 2.5
(-2.6)
A 		4.8
(-0.6)
A 		2.6
(-2.5)
A 		2.6
(-2.5)
A 		9
(3)
A 		2
(-3)
A 		7
C 4
(-0.4)
A 		6.7
(3)
A 		4.8
(0.6)
A 		3
(-1.7)
A 		2
(-3)
A 		2.5
(-2.4)
A 		5
avr 4.4
(1.3) 		4.6
(1.8) 		4
(0.3) 		2.7
(-3) 		4.3
(1) 		5.1
(3) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1.5
(-2.3)
A 		0.7
(-2.9)
A 		8.6
(3)
A 		0.5
(-3)
A 		8
B 1.9
(2.6)
A 		2
(3)
A 		1.3
(0)
A 		0.6
(-3)
A 		1
C 2
(-1.2)
A 		2
(-1.2)
A 		4.7
(3)
A 		0.8
(-3)
A 		4
avr 1.8
(-1.3) 		1.6
(-1.6) 		4.9
(3) 		0.6
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 1.2
(-1.2)
A 		0.8
(-2.4)
A 		1
(-1.8)
A 		0.6
(-3)
A 		0.6
(-3)
A 		2.6
(3)
A 		2
B 0.9
(-2.4)
A 		1.6
(-1.1)
A 		0.6
(-3)
A 		0.7
(-2.8)
A 		3.7
(3)
A 		0.7
(-2.8)
A 		3
C 1.5
(0.6)
A 		2.1
(3)
A 		1.2
(-0.6)
A 		0.6
(-3)
A 		0.7
(-2.6)
A 		0.8
(-2.2)
A 		2
avr 1.2
(0.3) 		1.5
(1.9) 		0.9
(-1.4) 		0.6
(-3) 		1.7
(3) 		1.4
(1.4) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179267_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12583
Sequence Type Exemplar sequence
Representative Public ID R10E8.5 NCBI
Target Description R10E8.5 /REP_DB=WormBase Gene ID /WP=CE18913 /TR=Q9XUR8 /GB=CAB04642.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075170(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075170 NCBI Caenorhabditis elegans R10E8.5 (R10E8.5) mRNA, complete cds. 11/11 None
GENEFINDER00000042689 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18257357:18259641:1 11/11 None
R10E8.5 ENSEMBL cdna:known chromosome:CEL140:V:18257357:18259641:1 gene:R10E8.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000042682 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18257356-18259641(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R10E8.5
Entrez Gene 187776 Entrez gene
SwissProt Q9XUR8 EMBL-EBI
WormBase CE18913 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04642 Hypothetical protein R10E8.5 [Caenorhabditis elegans] ref|NP_507571.1| R10E8.5 [Caenorhabditis elegans] 1.0E-177
blast CAB04143 Hypothetical protein F20E11.4 [Caenorhabditis elegans] ref|NP_507418.1| Seven TM Receptor family member (str-200) [Caenorhabditis elegans] 1.0E-105
blast CAB03803 Hypothetical protein B0391.3 [Caenorhabditis elegans] ref|NP_506883.1| B0391.3 [Caenorhabditis elegans] 1.0E-101
blast CAB04642 Hypothetical protein R10E8.5 [Caenorhabditis elegans] ref|NP_507571.1| R10E8.5 [Caenorhabditis elegans] 2.0E-89
blast CAB63348 Hypothetical protein Y37H2C.4 [Caenorhabditis elegans] ref|NP_507575.2| Y37H2C.4 [Caenorhabditis elegans] 1.0E-62
blast CAB04143 Hypothetical protein F20E11.4 [Caenorhabditis elegans] ref|NP_507418.1| Seven TM Receptor family member (str-200) [Caenorhabditis elegans] 2.0E-59
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.9E-20
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.5E-14
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507571.1 7 6-28,40-59,79-98,110-129,175-197,231-253,263-285
R10E8.5 7 6-28,40-59,79-98,110-129,175-197,231-253,263-285
GENEFINDER00000042689 5 6-28,40-59,220-242,276-298,308-330
Sequence
Target Sequence 
>C. ELEGANS:179267_AT
gtcgcttggggacttttgagctggctaactttgaacgaaactccttcgaaatcggagttt
ttaaaaacacacttccaacaactatacaacatgaaaatcgaggaatgtgcttatgtagct
tttcatttttggcctgtagatgctcacggggtgactcatccagacgctatttcatttctt
tgtgtagctgtgatgtttctaatactgggatcctcgtttgccagtgtgatctacttcggg
atcaaatgctatcaatacatatcgatccaacttggaaatgtatcctcacagtcacaggct
accaagactcttcaagttcaacttttctactctttaatctttcaaaccgcaattccatgt
attttcatgtacttaccaactagcgccatgttcattattccgatgcttgatcttggctac
gatattcgatttccgcttctttccatgactattgcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGCTTGGGGACTTTTGAGCTGGC 117 475 370 Antisense
GTAGCTTTTCATTTTTGGCCTGTAG 223 457 484 Antisense
GTAGATGCTCACGGGGTGACTCATC 264 457 505 Antisense
ACTCATCCAGACGCTATTTCATTTC 378 101 523 Antisense
TCTAATACTGGGATCCTCGTTTGCC 520 605 567 Antisense
GTTTGCCAGTGTGATCTACTTCGGG 587 451 585 Antisense
TGTATCCTCACAGTCACAGGCTACC 470 559 648 Antisense
TCATGTACTTACCAACTAGCGCCAT 407 621 734 Antisense
GCGCCATGTTCATTATTCCGATGCT 390 287 752 Antisense
TACGATATTCGATTTCCGCTTCTTT 568 647 787 Antisense
CGCTTCTTTCCATGACTATTGCAAT 465 253 803 Antisense
Sequence Source Affymetrix Proprietary Database