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[179265_at]

Description ZK228.6 /REP_DB=WormBase Gene ID /WP=CE16715 /TR=O46011 /GB=CAB04997.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 62      4grp_total > 11      6grp_cgc > 92      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 2.7
(-3)
A 		5.7
(-1.7)
A 		5.4
(-1.8)
A 		16.2
(3)
A 		14
B 10.2
(-1.8)
A 		6.4
(-2.5)
A 		3.4
(-3)
A 		38.8
(3)
A 		35
C 5.9
(-3)
A 		7.5
(3)
A 		6.2
(-1.9)
A 		6.2
(-1.9)
A 		2
avr 6.3
(-2.5) 		6.5
(-2.4) 		5
(-3) 		20.4
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 3.2
(-2.7)
A 		2.2
(-3)
A 		23
(3)
A 		11.5
(-0.3)
A 		6.9
(-1.6)
A 		3.1
(-2.7)
A 		21
B 3.2
(-2.8)
A 		8
(3)
A 		4.5
(-1.2)
A 		3
(-3)
A 		3.8
(-2)
A 		4.1
(-1.7)
A 		5
C 2.3
(-2)
A 		5.4
(1.7)
A 		2.3
(-2)
A 		3.6
(-0.5)
A 		6.5
(3)
A 		1.5
(-3)
A 		5
avr 2.9
(-3) 		5.2
(-1) 		9.9
(3) 		6
(-0.3) 		5.7
(-0.6) 		2.9
(-3) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1
(-3)
A 		1.2
(-2.1)
A 		1.4
(-1.3)
A 		2.4
(3)
A 		1
B 3.3
(-1)
A 		1.6
(-2.4)
A 		0.8
(-3)
A 		8.3
(3)
A 		8
C 2
(2)
A 		2.2
(3)
A 		2.2
(3)
A 		1
(-3)
A 		1
avr 2.1
(-1.5) 		1.7
(-2.5) 		1.5
(-3) 		3.9
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 0.6
(-3)
A 		0.8
(-2.7)
A 		5
(3)
A 		2.9
(0.1)
A 		2.1
(-1)
A 		0.8
(-2.7)
A 		4
B 1.1
(-2)
A 		2.6
(3)
A 		1.1
(-2)
A 		0.8
(-3)
A 		1.5
(-0.7)
A 		1.5
(-0.7)
A 		2
C 0.8
(-1.9)
A 		1.7
(1.5)
A 		0.6
(-2.6)
A 		0.7
(-2.3)
A 		2.1
(3)
A 		0.5
(-3)
A 		2
avr 0.8
(-3) 		1.7
(0.9) 		2.2
(3) 		1.5
(-0) 		1.9
(1.7) 		0.9
(-2.6) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179265_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13620
Sequence Type Exemplar sequence
Representative Public ID ZK228.6 NCBI
Target Description ZK228.6 /REP_DB=WormBase Gene ID /WP=CE16715 /TR=O46011 /GB=CAB04997.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075216(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075216 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-181) (srh-181) mRNA, complete cds. 11/11 None
SNAP00000029500 ENSEMBL cdna:SNAP chromosome:CEL140:V:18476240:18478842:1 11/11 None
GENEFINDER00000029502 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18476447:18478842:1 10/11 None
ZK228.6 ENSEMBL cdna:known chromosome:CEL140:V:18477097:18478842:1 gene:ZK228.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18477096-18478842(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srh-181
Ensembl ZK228.6
Entrez Gene 191253 Entrez gene
SwissProt O46011 EMBL-EBI
WormBase CE16715 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04997 Hypothetical protein ZK228.6 [Caenorhabditis elegans] ref|NP_507617.1| Serpentine Receptor, class H family member (srh-181) [Caenorhabditis elegans] 0.0
blast CAB04992 Hypothetical protein ZK228.5 [Caenorhabditis elegans] ref|NP_507616.2| Serpentine Receptor, class H family member (srh-182) [Caenorhabditis elegans] 1.0E-148
blast CAB04992 Hypothetical protein ZK228.5 [Caenorhabditis elegans] ref|NP_507616.2| Serpentine Receptor, class H family member (srh-182) [Caenorhabditis elegans] 1.0E-145
blast CAA98445 Hypothetical protein D1054.12 [Caenorhabditis elegans] ref|NP_505760.2| Serpentine Receptor, class H family member (srh-184) [Caenorhabditis elegans] 1.0E-103
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 2.4E-92
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 5.6E-85
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507617.1 7 15-37,50-72,96-115,136-155,198-220,241-263,273-295
ZK228.6 7 15-37,50-72,96-115,136-155,198-220,241-263,273-295
SNAP00000029500 7 28-50,63-85,108-127,148-167,210-232,253-275,285-307
GENEFINDER00000029502 7 66-88,101-123,146-165,186-205,265-287,308-330,340-362
Sequence
Target Sequence 
>C. ELEGANS:179265_AT
tcaccaaaggcccgacggcgggctcgcggagttggaaacgtgtattctacgttgtcttac
actattttctatcagtcacgtttattgctccagcgtactataacaagatggaccagcaat
tggggaggcagcttataaagcagctaatcccttgcatccccgccgaagtgcctgctcggc
cggatttcataattttagacactgacaaaactctaacatgctggtgcgtcggccttatgt
ttgtgttcttattcccacaagttatattcttcgtatttcaaatttcctggtacctctacc
acaccgtatcccagtcccaagccacaaatcgcctccagaagcaatttttcgtggccctat
gcattcaggtattcataccatttgctctgttgtgcttcccagtgatttatattatttttg
caatttattcgggctattataatcaagctgcaacaaatgtcgcacaaattgcggtatcat
gccatggcatcctctcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCACCAAAGGCCCGACGGCGGGCTC 670 593 377 Antisense
GTTGTCTTACACTATTTTCTATCAG 601 437 427 Antisense
ATCAGTCACGTTTATTGCTCCAGCG 399 29 447 Antisense
ATAAAGCAGCTAATCCCTTGCATCC 365 25 511 Antisense
TGCTCGGCCGGATTTCATAATTTTA 498 581 549 Antisense
AACTCTAACATGCTGGTGCGTCGGC 392 137 585 Antisense
TTCAAATTTCCTGGTACCTCTACCA 176 685 653 Antisense
CAGAAGCAATTTTTCGTGGCCCTAT 158 203 712 Antisense
GTGGCCCTATGCATTCAGGTATTCA 530 491 727 Antisense
ATACCATTTGCTCTGTTGTGCTTCC 158 23 751 Antisense
TATCATGCCATGGCATCCTCTCAAC 167 659 851 Antisense
Sequence Source Affymetrix Proprietary Database