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[179264_at]

Description K06G5.1 /REP_DB=WormBase Gene ID /WP=CE18851 /TR=Q9XUT9 /GB=CAB04581.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 26      6grp_high1_10_10 > 52      4grp_highest_8_8 > 25      4grp_high_8_8 > 59      6grp_highest_nonorm > 37      6grp_total > 62      4grp_total > 60      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4991
1 2 3 4 range
A 5133.3
(2.2)
P 		5316.2
(2.4)
P 		5724.7
(3)
P 		1412.3
(-3)
P 		4312
B 6402.8
(3)
P 		4653
(0.8)
P 		5377.4
(1.7)
P 		1546.3
(-3)
P 		4857
C 4632.5
(2.3)
P 		4762.5
(2.5)
P 		5080.8
(3)
P 		1487.2
(-3)
P 		3594
avr 5389.5
(3) 		4910.6
(2.3) 		5394.3
(3) 		1481.9
(-3) 		3912

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2122
1 2 3 4 5 6 range
A 3887.9
(-3)
P 		5612.3
(2.4)
P 		5819.4
(3)
P 		5700
(2.6)
P 		5093.2
(0.7)
P 		4198.4
(-2)
P 		1932
B 4730
(-2.2)
P 		4833
(-1.8)
P 		6010.1
(3)
P 		5073.5
(-0.8)
P 		5207.8
(-0.3)
P 		4543.7
(-3)
P 		1466
C 4270.4
(-3)
P 		4702.4
(-1.4)
P 		5883.5
(3)
P 		4730.5
(-1.3)
P 		5220.5
(0.5)
P 		4581.4
(-1.8)
P 		1613
avr 4296.1
(-3) 		5049.2
(-0.2) 		5904.3
(3) 		5168
(0.3) 		5173.8
(0.3) 		4441.2
(-2.5) 		1608
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1835
1 2 3 4 range
A 1869
(3)
P 		1154
(0.4)
P 		1496.6
(1.7)
P 		206.7
(-3)
P 		1662
B 2041.8
(3)
P 		1149.2
(-0.1)
P 		1246.1
(0.2)
P 		329.5
(-3)
P 		1712
C 1533.5
(2.1)
P 		1369.3
(1.4)
P 		1770.8
(3)
P 		250.8
(-3)
P 		1520
avr 1814.8
(3) 		1224.2
(0.7) 		1504.5
(1.8) 		262.3
(-3) 		1553

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1399
1 2 3 4 5 6 range
A 716.7
(-3)
P 		1996
(3)
P 		1267.3
(-0.4)
P 		1445.6
(0.4)
P 		1536.9
(0.8)
P 		1022.2
(-1.6)
P 		1279
B 1645.8
(-0.7)
P 		1608.7
(-0.9)
P 		1459.4
(-2.1)
P 		1343.8
(-3)
P 		2115.9
(3)
P 		1694.3
(-0.3)
P 		772
C 1582.8
(2.1)
P 		1434.9
(0.9)
P 		1497.4
(1.4)
P 		951.3
(-3)
P 		1689.3
(3)
P 		1533.6
(1.7)
P 		738
avr 1315.1
(-2.2) 		1679.9
(1.9) 		1408
(-1.2) 		1246.9
(-3) 		1780.7
(3) 		1416.7
(-1.1) 		534
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179264_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17761
Sequence Type Exemplar sequence
Representative Public ID K06G5.1 NCBI
Target Description K06G5.1 /REP_DB=WormBase Gene ID /WP=CE18851 /TR=Q9XUT9 /GB=CAB04581.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029594(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029594 NCBI Caenorhabditis elegans K06G5.1a (K06G5.1) mRNA, complete cds. 11/11 None
SNAP00000010472 ENSEMBL cdna:SNAP chromosome:CEL140:X:14214894:14218903:1 11/11 None
GENEFINDER00000010478 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14214894:14218903:1 11/11 None
K06G5.1a.3 ENSEMBL cdna:known chromosome:CEL140:X:14214859:14219009:1 gene:K06G5.1 11/11 None
K06G5.1a.2 ENSEMBL cdna:known chromosome:CEL140:X:14214892:14219009:1 gene:K06G5.1 11/11 None
K06G5.1a.1 ENSEMBL cdna:known chromosome:CEL140:X:14214893:14219009:1 gene:K06G5.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001029595 8/11 Cross Hyb Matching Probes None
K06G5.1b 8/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181531 2 1 NM_001029594 179264_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14214893-14218903(+) 98.56 100.0
Public Domain and Genome References
Ensembl K06G5.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04581 Hypothetical protein K06G5.1a [Caenorhabditis elegans] ref|NP_001024765.1| K06G5.1a [Caenorhabditis elegans] 0.0
blast CAH60773 Hypothetical protein K06G5.1b [Caenorhabditis elegans] ref|NP_001024766.1| K06G5.1b [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:179264_AT
gagcgaaagtcaaactccttcagaggatcttcaaaagaaattcgcagcaaaaggtgtaaa
cttggctatcattggatataacacaagccctggttcacttaactcaaatgactggtataa
ttatgtttcactcagtaccgatgctgatgttgcgccatttgtgaataggttctatctgaa
ttctggattgaataataatctgacaaacaattggtgtaaaataatcgctgatgctaatgc
taataattctatttcggaaccatcagacttttttggaccccccaaaaacggagcttcttg
gggaactgataatggacaaaagtctagatactgtaacttccaagactctacctacactta
tcaaagaaaagagcaagataaactggttactttgacggtgttctacgaactagaagtgga
gaaagattttctgaagttcttcgcagatggtgttgaaattgagagtttcaccggagtgga
tgtgaacaacgcaagttttgacgttgacgctaatatcatcaccgccaggttcaccagcga
tgctgctggcattcaacgtggattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCGAAAGTCAAACTCCTTCAGAG 130 387 930 Antisense
TAACACAAGCCCTGGTTCACTTAAC 73 639 1008 Antisense
ATTATGTTTCACTCAGTACCGATGC 655 13 1049 Antisense
CAGTACCGATGCTGATGTTGCGCCA 419 207 1062 Antisense
GTTGCGCCATTTGTGAATAGGTTCT 144 441 1078 Antisense
ATTTCGGAACCATCAGACTTTTTTG 522 5 1180 Antisense
AACGGAGCTTCTTGGGGAACTGATA 404 121 1216 Antisense
TACTTTGACGGTGTTCTACGAACTA 333 645 1317 Antisense
CGTTGACGCTAATATCATCACCGCC 224 247 1431 Antisense
CAGGTTCACCAGCGATGCTGCTGGC 85 207 1455 Antisense
TGCTGCTGGCATTCAACGTGGATTT 314 581 1470 Antisense
Sequence Source Affymetrix Proprietary Database