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[179263_at]

Description C51F7.1 /REP_DB=WormBase Gene ID /WP=CE18556 /TR=Q9XXK4 /GB=CAA19422.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 51      6grp_high1_10_10 > 26      4grp_highest_8_8 > 52      4grp_high_8_8 > 24      6grp_highest_nonorm > 0      6grp_total > 26      4grp_total > 39      6grp_highest_sub > De      6grp_cgc > 14      6grp_high1_sub > De      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1436
1 2 3 4 range
A 2395.7
(3)
P 		959.3
(-3)
P 		1332.2
(-1.4)
P 		1704.6
(0.1)
P 		1436
B 2073
(3)
P 		1245.2
(-2.5)
P 		1167.6
(-3)
P 		1508.5
(-0.7)
P 		905
C 2340.4
(3)
P 		1211.2
(-3)
P 		1239.2
(-2.9)
P 		1252.4
(-2.8)
P 		1129
avr 2269.7
(3) 		1138.6
(-3) 		1246.3
(-2.4) 		1488.5
(-1.1) 		1131

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1356
1 2 3 4 5 6 range
A 2450.3
(3)
P 		2126.9
(1.5)
P 		1322.6
(-2.4)
P 		1189.9
(-3)
P 		1841.6
(0.1)
P 		1535.4
(-1.4)
P 		1260
B 2087.1
(3)
P 		1821.4
(1.4)
P 		1504.4
(-0.5)
P 		1943.5
(2.1)
P 		1094.8
(-3)
P 		1769.1
(1.1)
P 		992
C 2149.6
(3)
P 		1978.6
(1.9)
P 		1571.7
(-0.7)
P 		1728.5
(0.3)
P 		1222.9
(-3)
P 		1457.1
(-1.5)
P 		927
avr 2229
(3) 		1975.6
(1.2) 		1466.2
(-2.4) 		1620.6
(-1.3) 		1386.4
(-3) 		1587.2
(-1.6) 		843
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 664
1 2 3 4 range
A 872.3
(3)
P 		208.2
(-3)
P 		348.3
(-1.7)
P 		249.5
(-2.6)
P 		664
B 661.1
(3)
P 		307.5
(-2.4)
P 		270.5
(-3)
P 		321.5
(-2.2)
P 		391
C 774.7
(3)
P 		348.2
(-1.5)
P 		431.9
(-0.7)
P 		211.2
(-3)
P 		564
avr 769.4
(3) 		288
(-2.7) 		350.2
(-1.9) 		260.7
(-3) 		509

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 509
1 2 3 4 5 6 range
A 451.7
(-0.9)
P 		756.4
(3)
P 		288
(-3)
P 		301.8
(-2.8)
P 		555.7
(0.4)
P 		373.8
(-1.9)
P 		468
B 726.2
(3)
P 		606.3
(1)
P 		365.3
(-3)
P 		514.8
(-0.5)
P 		444.8
(-1.7)
P 		659.7
(1.9)
P 		361
C 796.8
(3)
P 		603.7
(0.4)
P 		400
(-2.3)
P 		347.6
(-3)
P 		395.7
(-2.4)
P 		487.8
(-1.1)
P 		449
avr 658.2
(3) 		655.5
(2.9) 		351.1
(-3) 		388.1
(-2.3) 		465.4
(-0.8) 		507.1
(0) 		307
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179263_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12761
Sequence Type Exemplar sequence
Representative Public ID C51F7.1 NCBI
Target Description C51F7.1 /REP_DB=WormBase Gene ID /WP=CE18556 /TR=Q9XXK4 /GB=CAA19422.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073684(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073684 NCBI Caenorhabditis elegans FERM domain (protein4.1-ezrin-radixin-moesin) family member (frm-7) (frm-7) mRNA, complete cds. 11/11 None
C51F7.1.2 ENSEMBL cdna:known chromosome:CEL140:V:12305070:12309592:1 gene:C51F7.1 11/11 None
C51F7.1.1 ENSEMBL cdna:known chromosome:CEL140:V:12305072:12309592:1 gene:C51F7.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000043346 1/11 Cross Hyb Matching Probes None
GENEFINDER00000043347 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12305167-12309592(+) 99.28 100.0
Public Domain and Genome References
Gene Title
Gene Symbol frm-7
Ensembl C51F7.1
Entrez Gene 179687 Entrez gene
SwissProt Q9XXK4 EMBL-EBI
WormBase CE18556 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5856 cytoskeleton inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA19422 Hypothetical protein C51F7.1 [Caenorhabditis elegans] ref|NP_506085.1| FERM domain (protein4.1-ezrin-radixin-moesin) family member (frm-7) [Caenorhabditis elegans] 0.0
blast CAE75453 Hypothetical protein CBG23448 [Caenorhabditis briggsae] 0.0
blast XP_797238 PREDICTED: similar to Protein C14orf31 homolog [Strongylocentrotus purpuratus] 4.0E-29
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506085.1 3 970-992,1005-1027,1042-1064
C51F7.1.2 3 970-992,1005-1027,1042-1064
C51F7.1.1 3 970-992,1005-1027,1042-1064
Sequence
Target Sequence 
>C. ELEGANS:179263_AT
taatggcgacttaatcctaccaccacctcctccatatcaacaaccacaacaaagacttgc
ccagccctcccagctcacctatattgcatattatttgtacgggtgtagaagtgaaagttc
tgctctttttataatcttttcattttcaatcaagcgtactttcatactctcctgtttgaa
taatacgcttctttttgaattccaaaatgtcaatgctcaacaaaaaaccatgctcaatat
cacccttgttttcttttttgcctattctgtacaatttattgttttttttgctctcactta
ttccaccctcccacaaaaaccttgccatattggtgatttgcctctctatatttttcaaac
tttccgacaatttttgtgtgcttgtgtgctgctcatttttcctccgccgtttccccatag
acatttctcatgtgttccgaacttccaacaacgcctcgtttcttcttttttgtgtttgca
agtcataatcatcaacgaacccttagcatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATGGCGACTTAATCCTACCACCA 19 633 2793 Antisense
CTCCCAGCTCACCTATATTGCATAT 629 233 2859 Antisense
GTTCTGCTCTTTTTATAATCTTTTC 213 443 2909 Antisense
ATCAAGCGTACTTTCATACTCTCCT 342 27 2941 Antisense
AAACCATGCTCAATATCACCCTTGT 352 125 3017 Antisense
TGTTTTCTTTTTTGCCTATTCTGTA 533 561 3039 Antisense
ATTGTTTTTTTTGCTCTCACTTATT 201 5 3070 Antisense
ATTGGTGATTTGCCTCTCTATATTT 625 3 3121 Antisense
TTTTGTGTGCTTGTGTGCTGCTCAT 331 679 3164 Antisense
GTTTCCCCATAGACATTTCTCATGT 325 451 3201 Antisense
AATCATCAACGAACCCTTAGCATCA 51 171 3279 Antisense
Sequence Source Affymetrix Proprietary Database