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[179262_at]

Description K09C8.4 /REP_DB=WormBase Gene ID /WP=CE03480 /TR=Q21389 /GB=CAA91997.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 35      4grp_total > 14      6grp_cgc > 44      6grp_cgc_sub > 02      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 155
1 2 3 4 range
A 122.5
(0.5)
P 		72.2
(-2.6)
A 		65.5
(-3)
A 		163.7
(3)
P 		98
B 149.7
(3)
P 		29.1
(-3)
A 		42.8
(-2.3)
A 		99.8
(0.5)
P 		121
C 133.2
(0.4)
P 		88.5
(-1.9)
A 		67
(-3)
A 		184.3
(3)
P 		117
avr 135.1
(2.1) 		63.3
(-2.7) 		58.4
(-3) 		149.3
(3) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 73.8
(0.2)
P 		103.4
(3)
M 		91.8
(1.9)
P 		49.7
(-2.1)
A 		40.6
(-3)
A 		56.6
(-1.5)
A 		63
B 72.3
(-0.4)
P 		92.1
(1.3)
P 		112.8
(3)
P 		60.2
(-1.4)
M 		40.4
(-3)
A 		54.5
(-1.8)
A 		72
C 69.6
(0.4)
P 		96.8
(3)
P 		45.8
(-2)
A 		53.4
(-1.2)
A 		35.1
(-3)
A 		67.9
(0.2)
P 		62
avr 71.9
(0.4) 		97.4
(3) 		83.5
(1.6) 		54.4
(-1.4) 		38.7
(-3) 		59.7
(-0.9) 		59
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 44.6
(3)
P 		15.7
(-3)
A 		17.1
(-2.7)
A 		24
(-1.3)
P 		29
B 47.7
(3)
P 		7.2
(-3)
A 		9.9
(-2.6)
A 		21.3
(-0.9)
P 		41
C 44.1
(3)
P 		25.5
(-2.4)
A 		23.4
(-3)
A 		31.1
(-0.8)
P 		21
avr 45.5
(3) 		16.1
(-3) 		16.8
(-2.9) 		25.5
(-1.1) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 13.6
(-2.7)
P 		36.8
(3)
M 		20
(-1.1)
P 		12.6
(-2.9)
A 		12.2
(-3)
A 		13.8
(-2.6)
A 		25
B 25.2
(0.8)
P 		30.7
(3)
P 		27.4
(1.7)
P 		16
(-3)
M 		16.4
(-2.8)
A 		20.3
(-1.2)
A 		15
C 25.8
(1.8)
P 		29.6
(3)
P 		11.7
(-2.7)
A 		10.7
(-3)
A 		11.4
(-2.8)
A 		22.7
(0.8)
P 		19
avr 21.5
(-0.4) 		32.4
(3) 		19.7
(-0.9) 		13.1
(-3) 		13.3
(-2.9) 		18.9
(-1.2) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179262_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16921
Sequence Type Exemplar sequence
Representative Public ID K09C8.4 NCBI
Target Description K09C8.4 /REP_DB=WormBase Gene ID /WP=CE03480 /TR=Q21389 /GB=CAA91997.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077432(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077432 NCBI Caenorhabditis elegans LARGE (mouse dystroglycan glycosylation) homolog family member (lge-1) (lge-1) mRNA, complete cds. 10/11 None
K09C8.4 ENSEMBL cdna:known chromosome:CEL140:X:10966567:10969702:1 gene:K09C8.4 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000014662 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10966566-10969702(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol lge-1
Ensembl K09C8.4
Entrez Gene 187206 Entrez gene
SwissProt Q21389 EMBL-EBI
WormBase CE36552 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1588736_AT similar to like-glycosyltransferase cfa
CANINE:1585135_AT similar to like-glycosyltransferase cfa
CANINE_2:CFA.14857.1.A1_AT similar to like-glycosyltransferase cfa
CANINE_2:CFA.18336.1.S1_S_AT similar to like-glycosyltransferase cfa
CANINE_2:CFA.4008.1.A1_AT similar to like-glycosyltransferase cfa
CANINE_2:CFAAFFX.3514.1.S1_S_AT similar to like-glycosyltransferase cfa
CHICKEN:GGA.15229.1.S1_S_AT like-glycosyltransferase gga
CHICKEN:GGAAFFX.22571.1.S1_S_AT like-glycosyltransferase gga
CHICKEN:GGA.4620.1.S1_S_AT Like-glycosyltransferase gga
HG-U133_PLUS_2:215543_S_AT like-glycosyltransferase hs
HG-U133A_2:215543_S_AT like-glycosyltransferase hs
HG-U133A:215543_S_AT like-glycosyltransferase hs
HG-U133_PLUS_2:204414_AT like-glycosyltransferase hs
HG-U133A:204414_AT like-glycosyltransferase hs
HG-U133A_2:204414_AT like-glycosyltransferase hs
HU35KSUBA:RC_AA047380_AT like-glycosyltransferase hs
U133_X3P:HS.25220.1.S1_3P_A_AT like-glycosyltransferase hs
HG-U95AV2:41346_AT like-glycosyltransferase hs
HG-U95D:70708_AT like-glycosyltransferase hs
HG-U133A_2:215538_AT like-glycosyltransferase hs
HG-FOCUS:215538_AT like-glycosyltransferase hs
HG-U133_PLUS_2:215538_AT like-glycosyltransferase hs
HG-U133A:215538_AT like-glycosyltransferase hs
U133_X3P:HS.25220.1.A1_3P_AT like-glycosyltransferase hs
HG-U133_PLUS_2:234638_AT Like-glycosyltransferase hs
HG-U133B:234638_AT Like-glycosyltransferase hs
U133_X3P:HS.306785.0.S1_3P_X_AT Like-glycosyltransferase hs
U133_X3P:HS.306785.0.S1_3P_AT Like-glycosyltransferase hs
HG-U133_PLUS_2:234203_AT Like-glycosyltransferase hs
HG-U133B:234203_AT Like-glycosyltransferase hs
HG-U95D:67975_AT Like-glycosyltransferase hs
HG-U95E:85659_AT Like-glycosyltransferase hs
HU35KSUBD:RC_AA487165_AT Like-glycosyltransferase hs
MG-U74AV2:103276_AT like-glycosyltransferase mm
MOE430A:1417435_AT like-glycosyltransferase mm
MOUSE430A_2:1417435_AT like-glycosyltransferase mm
MOUSE430_2:1417435_AT like-glycosyltransferase mm
MOE430A:1417436_AT like-glycosyltransferase mm
MOUSE430A_2:1417436_AT like-glycosyltransferase mm
MOUSE430_2:1417436_AT like-glycosyltransferase mm
MOE430B:1458663_AT Like-glycosyltransferase (Large), mRNA mm
MOUSE430_2:1458663_AT Like-glycosyltransferase (Large), mRNA mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
16051 carbohydrate biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16758 transferase activity, transferring hexosyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91997 Hypothetical protein K09C8.4 [Caenorhabditis elegans] ref|NP_509833.2| LARGE (mouse dystroglycan glycosylation) homolog family member (lge-1) [Caenorhabditis elegans] 0.0
blast CAE70784 Hypothetical protein CBG17539 [Caenorhabditis briggsae] 1.0E-140
blast NP_001004538 glycosyltransferase-like 1B [Danio rerio] gb|AAU12252.1| glycosyltransferase-like 1B [Danio rerio] 1.0E-96
Protein Domains
Database ID Description E-Value
Pfam IPR002495 EMBL-EBI Glycosyl transferase, family 8 2.3E-9
Sequence
Target Sequence 
>C. ELEGANS:179262_AT
aagaagttctggtgatccctgcattggaaatgacatacccgcagctgaggttaaatttat
caaattttctctcgagaaaagatttggtgatagaacatttattgaacaaaaccattcaaa
cttttcgggaaacaatttggccaagttctcacgtacctacaaatatttcaaaatggataa
agtcaaatcgcacttatatggtagcacaaaatgtaaattatgaaaagaactatgaacctt
attttgtaatcaaaaaagaagaatgccctttttacgatcagcggttcggaggatttggct
ggaataaagtaactcatgtaatgcaactgaaaatgatgaattataagttcttggtttctc
caactagttttatgattcatcaaaatcataatgcttcaaaatcattgaaacgctggagac
gtgacccacattatcagaaatgccttcacacgttaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGAAGTTCTGGTGATCCCTGCATT 535 151 1373 Antisense
ATGACATACCCGCAGCTGAGGTTAA 635 43 1402 Antisense
AATTTATCAAATTTTCTCTCGAGAA 498 175 1426 Antisense
AATTTGGCCAAGTTCTCACGTACCT 496 173 1506 Antisense
AAATCGCACTTATATGGTAGCACAA 471 117 1557 Antisense
AATGCCCTTTTTACGATCAGCGGTT 120 167 1634 Antisense
AGCGGTTCGGAGGATTTGGCTGGAA 444 79 1652 Antisense
ATAAGTTCTTGGTTTCTCCAACTAG 216 23 1715 Antisense
CTCCAACTAGTTTTATGATTCATCA 297 235 1730 Antisense
AACGCTGGAGACGTGACCCACATTA 175 145 1781 Antisense
TATCAGAAATGCCTTCACACGTTAA 174 659 1804 Antisense
Sequence Source Affymetrix Proprietary Database