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[179261_at]

Description ZK228.8 /REP_DB=WormBase Gene ID /WP=CE16717 /TR=O45961 /GB=CAA16412.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 56      6grp_cgc > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 50.1
(3)
M 		17.4
(-1.7)
A 		17.8
(-1.7)
A 		8.6
(-3)
A 		42
B 12.8
(-1.7)
A 		2.9
(-3)
A 		50
(3)
A 		39.7
(1.7)
A 		47
C 2.7
(-3)
A 		45.2
(3)
P 		33.1
(1.3)
A 		14.8
(-1.3)
A 		43
avr 21.9
(-2.6) 		21.8
(-2.6) 		33.6
(3) 		21
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 50.7
(3)
A 		28.6
(-1.1)
A 		18.2
(-3)
A 		47.4
(2.4)
A 		38.2
(0.7)
A 		24
(-1.9)
A 		33
B 24.2
(-0.8)
A 		55.4
(3)
A 		6.7
(-3)
A 		24.5
(-0.8)
A 		44.7
(1.7)
A 		23.1
(-1)
A 		49
C 42.9
(3)
A 		21.8
(-3)
A 		22.3
(-2.9)
A 		28.1
(-1.2)
A 		31.9
(-0.1)
A 		26.5
(-1.7)
A 		21
avr 39.3
(3) 		35.3
(2) 		15.7
(-3) 		33.3
(1.5) 		38.3
(2.7) 		24.5
(-0.8) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 18.2
(3)
M 		3.8
(-2.1)
A 		4.7
(-1.8)
A 		1.3
(-3)
A 		17
B 4.1
(-1.1)
A 		0.7
(-3)
A 		11.6
(3)
A 		8.5
(1.3)
A 		11
C 0.9
(-3)
A 		13
(3)
P 		11.5
(2.3)
A 		2.5
(-2.2)
A 		12
avr 7.7
(1.2) 		5.8
(-1) 		9.3
(3) 		4.1
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 9.4
(1.1)
A 		10.2
(1.7)
A 		4
(-3)
A 		12
(3)
A 		11.5
(2.6)
A 		5.9
(-1.6)
A 		8
B 8.4
(-0.6)
A 		18.4
(3)
A 		1.6
(-3)
A 		6.5
(-1.3)
A 		18.1
(2.9)
A 		8.6
(-0.5)
A 		17
C 15.9
(3)
A 		6.7
(-2.4)
A 		5.7
(-2.9)
A 		5.6
(-3)
A 		10.3
(-0.3)
A 		8.9
(-1.1)
A 		10
avr 11.2
(1.7) 		11.8
(2.1) 		3.8
(-3) 		8
(-0.3) 		13.3
(3) 		7.8
(-0.5) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179261_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14061
Sequence Type Exemplar sequence
Representative Public ID ZK228.8 NCBI
Target Description ZK228.8 /REP_DB=WormBase Gene ID /WP=CE16717 /TR=O45961 /GB=CAA16412.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075218(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075218 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-178) (srh-178) mRNA, complete cds. 11/11 None
GENEFINDER00000029504 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18481041:18481583:-1 9/11 None
ZK228.8 ENSEMBL cdna:known chromosome:CEL140:V:18481041:18482905:-1 gene:ZK228.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034240 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18481040-18482905(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srh-178
Ensembl ZK228.8
Entrez Gene 191255 Entrez gene
SwissProt O45961 EMBL-EBI
WormBase CE16717 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04999 Hypothetical protein ZK228.8 [Caenorhabditis elegans] emb|CAA16412.1| Hypothetical protein ZK228.8 [Caenorhabditis elegans] ref|NP_507619.1| Serpentine Receptor, class H family member (srh-178) [Caenorhabditis elegans] 0.0
blast CAB04998 Hypothetical protein ZK228.7 [Caenorhabditis elegans] ref|NP_507618.1| Serpentine Receptor, class H family member (srh-179) [Caenorhabditis elegans] 1.0E-122
blast CAA98445 Hypothetical protein D1054.12 [Caenorhabditis elegans] ref|NP_505760.2| Serpentine Receptor, class H family member (srh-184) [Caenorhabditis elegans] 1.0E-117
blast CAB04999 Hypothetical protein ZK228.8 [Caenorhabditis elegans] emb|CAA16412.1| Hypothetical protein ZK228.8 [Caenorhabditis elegans] ref|NP_507619.1| Serpentine Receptor, class H family member (srh-178) [Caenorhabditis elegans] 2.0E-89
blast CAB04998 Hypothetical protein ZK228.7 [Caenorhabditis elegans] ref|NP_507618.1| Serpentine Receptor, class H family member (srh-179) [Caenorhabditis elegans] 4.0E-58
blast CAA98445 Hypothetical protein D1054.12 [Caenorhabditis elegans] ref|NP_505760.2| Serpentine Receptor, class H family member (srh-184) [Caenorhabditis elegans] 4.0E-52
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 8.7E-84
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507619.1 7 20-41,54-76,96-118,140-162,202-224,245-267,277-299
ZK228.8 7 20-41,54-76,96-118,140-162,202-224,245-267,277-299
GENEFINDER00000029504 3 29-51,72-94,104-126
Sequence
Target Sequence 
>C. ELEGANS:179261_AT
gtaacgtatattgctccgggattttttaatattgtggatcaggactttgcaaagtcgttt
gtgaaaattaaaatcccatgcatccccgacgagatcctgcatcgccccggatactttgtc
ctagccgtggacaacacaatccccaagtattgcatagccttcatgctaactctagtcatg
tcccaagtgtttttctacgtcggagccatcttctggcaccttttccacacagttgctcag
tcccaggctacaaatcgcctgcaaaaacattttttcctggcgatctgtgttcaggtgttc
attccaattttactgataacttttccagtgctttatattgttttggcaatttggtttggg
tattataatcaggccgctaccaacattgctcttttggctatcccattccatggagttttg
tcgacaatttcgatgctctgtgtgcatcggccgtatcgagaagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAACGTATATTGCTCCGGGATTTT 100 463 463 Antisense
GAAAATTAAAATCCCATGCATCCCC 531 353 525 Antisense
CGGATACTTTGTCCTAGCCGTGGAC 121 243 570 Antisense
AATCCCCAAGTATTGCATAGCCTTC 580 165 600 Antisense
CTCAGTCCCAGGCTACAAATCGCCT 326 223 698 Antisense
CATTTTTTCCTGGCGATCTGTGTTC 294 215 730 Antisense
ATCTGTGTTCAGGTGTTCATTCCAA 56 35 745 Antisense
ATTATAATCAGGCCGCTACCAACAT 400 13 824 Antisense
CCAACATTGCTCTTTTGGCTATCCC 41 277 842 Antisense
TCGACAATTTCGATGCTCTGTGTGC 657 601 883 Antisense
GTGTGCATCGGCCGTATCGAGAAGC 174 487 902 Antisense
Sequence Source Affymetrix Proprietary Database