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[179258_at]

Description T03E6.8 /REP_DB=WormBase Gene ID /WP=CE16334 /TR=O45740 /GB=CAB07281.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 05      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 32.6
(-0.4)
A 		5.5
(-3)
A 		5
(-3)
A 		69.2
(3)
A 		64
B 31.1
(3)
A 		13.4
(-3)
A 		31
(3)
A 		20.9
(-0.5)
A 		18
C 11.4
(-2)
A 		8.1
(-2.7)
A 		6.4
(-3)
A 		37.7
(3)
A 		31
avr 25
(-0.1) 		9
(-3) 		14.1
(-2.1) 		42.6
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 3.9
(-3)
A 		14.1
(-2.3)
A 		30.9
(-1.2)
A 		81.1
(2.1)
A 		95.4
(3)
A 		4.7
(-2.9)
A 		92
B 21
(-2.3)
A 		41.8
(-1.2)
A 		7.7
(-3)
A 		119.6
(3)
A 		90.1
(1.4)
A 		21.2
(-2.3)
A 		112
C 34.6
(-1.8)
A 		32.8
(-1.9)
A 		18
(-3)
A 		101
(3)
A 		97.8
(2.8)
A 		34.6
(-1.8)
A 		83
avr 19.8
(-2.9) 		29.6
(-2.2) 		18.9
(-3) 		100.6
(3) 		94.4
(2.5) 		20.2
(-2.9) 		82
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 11.9
(3)
A 		1.2
(-3)
A 		1.3
(-2.9)
A 		10.1
(2)
A 		11
B 9.9
(3)
A 		3.3
(-3)
A 		7.2
(0.5)
A 		4.4
(-2)
A 		7
C 3.8
(-0.7)
A 		2.3
(-2.9)
A 		2.2
(-3)
A 		6.4
(3)
A 		4
avr 8.5
(3) 		2.3
(-3) 		3.6
(-1.7) 		7
(1.5) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 0.7
(-3)
A 		5
(-2.1)
A 		6.7
(-1.7)
A 		20.6
(1.2)
A 		28.8
(3)
A 		1.1
(-2.9)
A 		28
B 7.3
(-2.1)
A 		13.9
(-0.9)
A 		1.9
(-3)
A 		31.7
(2.2)
A 		36.6
(3)
A 		7.9
(-2)
A 		35
C 12.8
(-1.2)
A 		10
(-1.8)
A 		4.6
(-3)
A 		20.3
(0.5)
A 		31.7
(3)
A 		11.6
(-1.5)
A 		27
avr 6.9
(-2.5) 		9.6
(-1.9) 		4.4
(-3) 		24.2
(1.2) 		32.4
(3) 		6.9
(-2.5) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179258_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13786
Sequence Type Exemplar sequence
Representative Public ID T03E6.8 NCBI
Target Description T03E6.8 /REP_DB=WormBase Gene ID /WP=CE16334 /TR=O45740 /GB=CAB07281.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074799
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000008702 ENSEMBL cdna:SNAP chromosome:CEL140:V:16601571:16602849:-1 10/11 None
GENEFINDER00000008711 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16601571:16603149:-1 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16601691-16605538(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07281 Hypothetical protein T03E6.8 [Caenorhabditis elegans] ref|NP_507200.2| T03E6.8 [Caenorhabditis elegans] 1.0E-92
blast CAE61209 Hypothetical protein CBG05001 [Caenorhabditis briggsae] 2.0E-75
blast CAB07281 Hypothetical protein T03E6.8 [Caenorhabditis elegans] ref|NP_507200.2| T03E6.8 [Caenorhabditis elegans] 3.0E-71
blast CAE61209 Hypothetical protein CBG05001 [Caenorhabditis briggsae] 3.0E-58
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000008702 4 112-134,176-198,219-241,251-273
GENEFINDER00000008711 7 20-42,55-77,92-114,146-168,210-232,253-275,285-307
Sequence
Target Sequence 
>C. ELEGANS:179258_AT
ttgtagctatttcaattctcccggccctgacaattcagctggatttttataatttccgtc
agagtgcctatgagtacttcaaaaatccaatggtcctgtgcgacgatatgttcatcgccg
atcatcgtcactggaagatttatgttccatacttttgttcgctaatttttggcgcctggt
gctcgataactggcgtcacaagtgtgtttacttgtcttttgatgatttatgaatctcgaa
atattgtctccaaggagactcttaacatgcagaggaattttactggaattttaatttatc
aggtatgtattgtttcagcaaccgatactttgtgggacttttttgtcagaacattttttt
ttattatttggaagaaaattagaattttaatttgtcagggaaaacaaattttacgctttt
caggctctggtatacattattttcataatagtgccagtcgcagtcatatccacacttttc
tatgcggatattcacattacagactacgggcttcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGTAGCTATTTCAATTCTCCCGGC 376 705 1208 Antisense
CCGGCCCTGACAATTCAGCTGGATT 102 267 1228 Antisense
AAATCCAATGGTCCTGTGCGACGAT 498 119 1290 Antisense
TATGTTCATCGCCGATCATCGTCAC 8 657 1314 Antisense
TATGTTCCATACTTTTGTTCGCTAA 513 655 1348 Antisense
CGCTAATTTTTGGCGCCTGGTGCTC 370 255 1367 Antisense
CTGGTGCTCGATAACTGGCGTCACA 538 239 1383 Antisense
AATTTTACGCTTTTCAGGCTCTGGT 523 173 1614 Antisense
ATAGTGCCAGTCGCAGTCATATCCA 46 23 1655 Antisense
GTCATATCCACACTTTTCTATGCGG 617 467 1670 Antisense
TTCACATTACAGACTACGGGCTTCC 471 683 1698 Antisense
Sequence Source Affymetrix Proprietary Database