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[179253_at]

Description C26G2.2 /REP_DB=WormBase Gene ID /WP=CE19704 /TR=Q9U3P1 /GB=CAB63433.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 46      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 72.3
(3)
A 		56.9
(1)
A 		33.7
(-2)
A 		25.6
(-3)
A 		47
B 60.7
(3)
P 		40.1
(0.9)
A 		3
(-3)
A 		9.6
(-2.3)
A 		58
C 65.9
(3)
P 		5.1
(-3)
A 		28.5
(-0.7)
A 		37.8
(0.2)
A 		61
avr 66.3
(3) 		34
(-1.3) 		21.7
(-3) 		24.3
(-2.7) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 51.6
(3)
A 		44.2
(2)
A 		42.4
(1.8)
M 		42.6
(1.8)
A 		5
(-3)
A 		13.5
(-1.9)
A 		47
B 29.3
(2.3)
A 		31.9
(3)
A 		10.7
(-3)
A 		22.2
(0.3)
A 		24.6
(0.9)
A 		14.6
(-1.9)
A 		21
C 31.7
(0.5)
A 		46.4
(2.5)
A 		6.6
(-3)
A 		34
(0.8)
A 		49.7
(3)
A 		44.7
(2.3)
A 		43
avr 37.5
(2.1) 		40.8
(3) 		19.9
(-3) 		32.9
(0.7) 		26.4
(-1.1) 		24.3
(-1.7) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 26.3
(3)
A 		12.3
(-0.7)
A 		8.8
(-1.6)
A 		3.7
(-3)
A 		23
B 19.4
(3)
P 		9.9
(-0)
A 		0.7
(-3)
A 		2.1
(-2.6)
A 		19
C 21.8
(3)
P 		1.5
(-3)
A 		9.9
(-0.5)
A 		6.4
(-1.6)
A 		20
avr 22.5
(3) 		7.9
(-1.8) 		6.5
(-2.2) 		4.1
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 9.5
(0.4)
A 		15.7
(3)
A 		9.2
(0.3)
M 		10.8
(0.9)
A 		1.5
(-3)
A 		3.3
(-2.2)
A 		14
B 10.2
(2.7)
A 		10.6
(3)
A 		2.6
(-3)
A 		5.9
(-0.5)
A 		10
(2.6)
A 		5.4
(-0.9)
A 		8
C 11.8
(1.2)
A 		14.2
(2.2)
A 		1.7
(-3)
A 		6.8
(-0.9)
A 		16.1
(3)
A 		15
(2.5)
A 		14
avr 10.5
(1) 		13.5
(3) 		4.5
(-3) 		7.8
(-0.8) 		9.2
(0.1) 		7.9
(-0.7) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179253_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17497
Sequence Type Exemplar sequence
Representative Public ID C26G2.2 NCBI
Target Description C26G2.2 /REP_DB=WormBase Gene ID /WP=CE19704 /TR=Q9U3P1 /GB=CAB63433.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078035(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078035 NCBI Caenorhabditis elegans C26G2.2 (C26G2.2) mRNA, complete cds. 11/11 None
SNAP00000005711 ENSEMBL cdna:SNAP chromosome:CEL140:X:14664252:14671219:1 10/11 None
GENEFINDER00000005715 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14664634:14671219:1 11/11 None
C26G2.2 ENSEMBL cdna:known chromosome:CEL140:X:14665303:14671219:1 gene:C26G2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14665302-14671219(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C26G2.2
Entrez Gene 182945 Entrez gene
SwissProt Q9U3P1 EMBL-EBI
WormBase CE37322 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB63433 Hypothetical protein C26G2.2 [Caenorhabditis elegans] ref|NP_510436.2| C26G2.2 [Caenorhabditis elegans] 0.0
blast CAE63212 Hypothetical protein CBG07569 [Caenorhabditis briggsae] 5.0E-90
blast CAE63212 Hypothetical protein CBG07569 [Caenorhabditis briggsae] 3.0E-79
blast CAE63212 Hypothetical protein CBG07569 [Caenorhabditis briggsae] 3.0E-77
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510436.2 1 899-918
C26G2.2 1 899-918
SNAP00000005711 1 1000-1019
GENEFINDER00000005715 1 1081-1100
Sequence
Target Sequence 
>C. ELEGANS:179253_AT
gacttccgcagactgaaacaacgccaagaaaagagaaaatgttgatcttgaaactgcaag
tacccgacgagattgatgtgaattccgtgcaattcatcaagaacatcacggccagtttgc
gaagactggttcgagatgtgtcgacagaattgaggaaacgcaggaaacgttcactcaacg
tgacttcaattgatacgaggcaataccatgcaataccaattgcagattcagacgacgtac
aaagtatacccatcaaggttgaaaacatcaccaaatccttaaacataactgtggtcattt
tcgctttagaatttgacccagttgtgagcaatggagaagaagagctggaaaaagctcttc
atgaagtagacacctataatttgcacagatatttttcttttgagcccgtggaaaaaatat
cattcgacaggacgcttgtaaacgaggagaagctgcgtgaagtgctgttagcttcgtttg
tagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTTCCGCAGACTGAAACAACGCC 547 371 2288 Antisense
GAAACTGCAAGTACCCGACGAGATT 600 351 2337 Antisense
ACATCACGGCCAGTTTGCGAAGACT 295 105 2390 Antisense
GGAAACGTTCACTCAACGTGACTTC 5 527 2450 Antisense
GAGGCAATACCATGCAATACCAATT 211 405 2484 Antisense
GAAAACATCACCAAATCCTTAAACA 394 355 2548 Antisense
ATAACTGTGGTCATTTTCGCTTTAG 493 25 2572 Antisense
TTCGCTTTAGAATTTGACCCAGTTG 685 693 2587 Antisense
AGATATTTTTCTTTTGAGCCCGTGG 49 65 2674 Antisense
ATATCATTCGACAGGACGCTTGTAA 260 21 2704 Antisense
AAGTGCTGTTAGCTTCGTTTGTAGC 32 159 2747 Antisense
Sequence Source Affymetrix Proprietary Database