[Home] | [Total List]

[179251_at]

Description T28C6.5 /REP_DB=WormBase Gene ID /WP=CE03750 /TR=Q22846 /GB=CAA90996.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 78      4grp_total > 34      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 29.5
(-2.1)
A 		87.7
(2.7)
A 		18.6
(-3)
A 		91.1
(3)
A 		73
B 32.8
(-0.3)
A 		67.1
(3)
A 		51.2
(1.5)
A 		5
(-3)
A 		62
C 32.9
(-3)
A 		72.7
(1)
A 		57
(-0.6)
A 		92.1
(3)
A 		59
avr 31.7
(-3) 		75.8
(3) 		42.3
(-1.6) 		62.7
(1.2) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 190
1 2 3 4 5 6 range
A 68.7
(-0.8)
A 		5.5
(-3)
A 		40.9
(-1.8)
A 		17.7
(-2.6)
A 		97.4
(0.2)
A 		175.7
(3)
P 		170
B 42.8
(-2.1)
A 		59.3
(-0.9)
A 		29.5
(-3)
A 		50.5
(-1.5)
A 		75.1
(0.2)
P 		115.3
(3)
P 		86
C 26.3
(-3)
A 		67.9
(-1.5)
A 		42.6
(-2.4)
A 		50.3
(-2.1)
A 		91.1
(-0.7)
A 		195
(3)
P 		169
avr 45.9
(-2.6) 		44.2
(-2.7) 		37.7
(-3) 		39.5
(-2.9) 		87.9
(-0.6) 		162
(3) 		124
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 10.7
(-0.5)
A 		19
(3)
A 		4.9
(-3)
A 		13.3
(0.6)
A 		14
B 10.5
(0.6)
A 		16.6
(3)
A 		11.9
(1.2)
A 		1.1
(-3)
A 		16
C 10.9
(-3)
A 		20.9
(3)
A 		19.9
(2.4)
A 		15.5
(-0.2)
A 		10
avr 10.7
(-2.5) 		18.8
(3) 		12.2
(-1.5) 		10
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 12.7
(-1.4)
A 		1.9
(-3)
A 		8.9
(-2)
A 		4.5
(-2.6)
A 		29.4
(1)
A 		42.8
(3)
P 		41
B 14.9
(-1.7)
A 		19.7
(-0.9)
A 		7.2
(-3)
A 		13.4
(-2)
A 		30.5
(0.9)
P 		43
(3)
P 		36
C 9.8
(-3)
A 		20.7
(-1.8)
A 		10.8
(-2.9)
A 		10.1
(-3)
A 		29.5
(-0.9)
A 		65.3
(3)
P 		56
avr 12.5
(-2.5) 		14.1
(-2.3) 		9
(-3) 		9.3
(-3) 		29.8
(0) 		50.4
(3) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179251_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8626
Sequence Type Exemplar sequence
Representative Public ID T28C6.5 NCBI
Target Description T28C6.5 /REP_DB=WormBase Gene ID /WP=CE03750 /TR=Q22846 /GB=CAA90996.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069124(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069124 NCBI Caenorhabditis elegans T28C6.5 (T28C6.5) mRNA, complete cds. 11/11 None
SNAP00000005653 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8821513:8822782:1 11/11 None
T28C6.5 ENSEMBL cdna:known chromosome:CEL140:IV:8821429:8822782:1 gene:T28C6.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000005661 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8821414-8822788(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T28C6.5
Entrez Gene 189036 Entrez gene
SwissProt Q22846 EMBL-EBI
WormBase CE35631 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90996 Hypothetical protein T28C6.5 [Caenorhabditis elegans] ref|NP_501525.2| T28C6.5 [Caenorhabditis elegans] 1.0E-178
blast CAA90996 Hypothetical protein T28C6.5 [Caenorhabditis elegans] ref|NP_501525.2| T28C6.5 [Caenorhabditis elegans] 1.0E-173
blast CAE57010 Hypothetical protein CBG24882 [Caenorhabditis briggsae] 1.0E-39
blast CAH10784 Hypothetical protein R102.10 [Caenorhabditis elegans] ref|NP_001023338.1| R102.10 [Caenorhabditis elegans] 2.0E-38
blast CAE57010 Hypothetical protein CBG24882 [Caenorhabditis briggsae] 7.0E-38
blast CAH10784 Hypothetical protein R102.10 [Caenorhabditis elegans] ref|NP_001023338.1| R102.10 [Caenorhabditis elegans] 1.0E-36
Sequence
Target Sequence 
>C. ELEGANS:179251_AT
aatgcgacggtccttgcggaaaattggtcaatatcaatgaggtggcacagtttggatgtg
atcatcttatttgtgatagttgtcgccaatcccagaaaagcgctactctcttcgatggta
agtatgagggatctccgggctgttgcaattctgaatgtttggcaaaggcagagactgatg
ggttgaaacttcgatccggtagacgaatagactctacgaaatcttctgtttcactcagat
ctaacgatggtccctgggaagtacttcacgttcatgtatctattgtgaaaaagtggacag
gtaaattataccgcactcagttggactatgagttctcttcgcaaacacgtgtagctgagc
tggcaaaaacgttagaagcattcaaggatataatatcatccggtcgttcatactacagta
tgtgcaagccccgctcatacaaagatcttcatccaatcgctattattgacacaaaccttc
gcttctatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGCGACGGTCCTTGCGGAAAATT 318 165 485 Antisense
TTGTGATAGTTGTCGCCAATCCCAG 133 709 555 Antisense
CAGAAAAGCGCTACTCTCTTCGATG 539 205 577 Antisense
TCTCCGGGCTGTTGCAATTCTGAAT 643 609 616 Antisense
GATCTAACGATGGTCCCTGGGAAGT 293 419 722 Antisense
ATTATACCGCACTCAGTTGGACTAT 310 13 789 Antisense
GTTGGACTATGAGTTCTCTTCGCAA 116 437 804 Antisense
ATCATCCGGTCGTTCATACTACAGT 537 27 879 Antisense
ATACTACAGTATGTGCAAGCCCCGC 678 23 894 Antisense
AAAGATCTTCATCCAATCGCTATTA 325 123 925 Antisense
TTGACACAAACCTTCGCTTCTATCA 360 703 950 Antisense
Sequence Source Affymetrix Proprietary Database