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[179250_at]

Description F13E6.5 /REP_DB=WormBase Gene ID /WP=CE03202 /TR=Q19403 /GB=CAA92120.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 20      4grp_highest_8_8 > 09      4grp_high_8_8 > 61      6grp_highest_nonorm > 62      6grp_total > 40      4grp_total > 58      6grp_highest_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 606
1 2 3 4 range
A 558.1
(-0.6)
P 		900.5
(2.8)
P 		916.7
(3)
P 		311.5
(-3)
P 		605
B 515.4
(-0.6)
P 		800.5
(2.7)
P 		828.1
(3)
P 		311
(-3)
P 		517
C 664.3
(1)
P 		720.6
(1.7)
P 		827.2
(3)
P 		345.5
(-3)
P 		482
avr 579.3
(-0.1) 		807.2
(2.4) 		857.3
(3) 		322.7
(-3) 		535

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 380
1 2 3 4 5 6 range
A 453.3
(1)
P 		510.6
(2.3)
P 		539.8
(3)
P 		462.8
(1.3)
P 		341.9
(-1.5)
P 		274.9
(-3)
P 		265
B 464.2
(-0.9)
P 		408.7
(-2)
P 		651.5
(3)
P 		470.7
(-0.8)
P 		362.8
(-3)
P 		365.4
(-2.9)
P 		289
C 451.3
(0.4)
P 		502.1
(1.4)
P 		472.2
(0.8)
P 		586.4
(3)
P 		271.2
(-3)
P 		449.4
(0.4)
P 		315
avr 456.3
(0.4) 		473.8
(0.9) 		554.5
(3) 		506.6
(1.7) 		325.3
(-3) 		363.2
(-2) 		229
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 243
1 2 3 4 range
A 203.2
(1.9)
P 		195.5
(1.6)
P 		239.6
(3)
P 		45.6
(-3)
P 		194
B 164.3
(1.5)
P 		197.7
(3)
P 		191.9
(2.7)
P 		66.3
(-3)
P 		131
C 219.9
(1.2)
P 		207.2
(0.9)
P 		288.3
(3)
P 		58.3
(-3)
P 		230
avr 195.8
(1.6) 		200.1
(1.7) 		239.9
(3) 		56.7
(-3) 		183

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 83.6
(-2.1)
P 		181.6
(3)
P 		117.6
(-0.3)
P 		117.4
(-0.4)
P 		103.2
(-1.1)
P 		66.9
(-3)
P 		115
B 161.5
(3)
P 		136.1
(-1.1)
P 		158.2
(2.5)
P 		124.7
(-3)
P 		147.4
(0.7)
P 		136.3
(-1.1)
P 		37
C 167.3
(3)
P 		153.2
(1.9)
P 		120.2
(-0.6)
P 		117.9
(-0.7)
P 		87.7
(-3)
P 		150.5
(1.7)
P 		80
avr 137.5
(0.4) 		157
(3) 		132
(-0.4) 		120
(-2) 		112.8
(-3) 		117.9
(-2.3) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179250_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17226
Sequence Type Exemplar sequence
Representative Public ID F13E6.5 NCBI
Target Description F13E6.5 /REP_DB=WormBase Gene ID /WP=CE03202 /TR=Q19403 /GB=CAA92120.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077389(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077389 NCBI Caenorhabditis elegans F13E6.5 (F13E6.5) mRNA, complete cds. 11/11 None
SNAP00000007372 ENSEMBL cdna:SNAP chromosome:CEL140:X:10695243:10697635:1 11/11 None
GENEFINDER00000007376 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10695243:10697635:1 11/11 None
F13E6.5 ENSEMBL cdna:known chromosome:CEL140:X:10695232:10697760:1 gene:F13E6.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10694891-10697635(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F13E6.5
Entrez Gene 181268 Entrez gene
SwissProt Q19403 EMBL-EBI
WormBase CE37502 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92120 Hypothetical protein F13E6.5 [Caenorhabditis elegans] ref|NP_509790.2| F13E6.5 [Caenorhabditis elegans] 1.0E-175
blast CAE60816 Hypothetical protein CBG04521 [Caenorhabditis briggsae] 1.0E-160
blast AAM28631 lipid phosphate phosphohydrolase 1a [Rattus norvegicus] 3.0E-23
Protein Domains
Database ID Description E-Value
Pfam IPR000326 EMBL-EBI PA-phosphatase related phosphoesterase 6.2E-35
Pfam IPR000326 EMBL-EBI PA-phosphatase related phosphoesterase 6.1E-35
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509790.2 6 34-56,89-108,121-143,199-218,231-253,263-282
F13E6.5 6 34-56,89-108,121-143,199-218,231-253,263-282
SNAP00000007372 6 34-56,89-108,121-143,199-218,231-253,263-282
GENEFINDER00000007376 6 34-56,89-108,121-143,199-218,231-253,263-282
Sequence
Target Sequence 
>C. ELEGANS:179250_AT
attcttctcagctactactatcacttatttgaaataccttctgatgtatgcagcatgcac
atttgcaatggaatttctcaagtgctatgttggacgtcttcggccacactttttcagtgt
ctgcaaaccagattggtcgaaagtcgattgtactgacaagcaaagctttattgattcaag
cgatcttgtatgcaccaacccaaatcctcgcaagatccgtactgcccgtacatcattccc
gtctggacatacagctgctgctttccatgtgtttctttttgtttatatctacttgagaag
aatggctgaaaatactgggatcaaggagatcatcaccattcggaatattctcgtcccctc
gtacgcactttggactgttttttgcgcagttacaagggttaccgataattggcattttcc
aactgatgtccttggtggcgttattctggcagttgtcttcattatcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCTTCTCAGCTACTACTATCACT 530 11 414 Antisense
AAGTGCTATGTTGGACGTCTTCGGC 375 159 493 Antisense
TCTTCGGCCACACTTTTTCAGTGTC 324 615 510 Antisense
GATCTTGTATGCACCAACCCAAATC 419 417 595 Antisense
CAAATCCTCGCAAGATCCGTACTGC 129 193 614 Antisense
ACATCATTCCCGTCTGGACATACAG 700 105 643 Antisense
ATACAGCTGCTGCTTTCCATGTGTT 607 23 662 Antisense
CACCATTCGGAATATTCTCGTCCCC 230 183 747 Antisense
GCACTTTGGACTGTTTTTTGCGCAG 563 315 778 Antisense
ATGTCCTTGGTGGCGTTATTCTGGC 167 47 839 Antisense
ATTCTGGCAGTTGTCTTCATTATCC 132 11 856 Antisense
Sequence Source Affymetrix Proprietary Database