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[179249_at]

Description ZK617.2 /REP_DB=WormBase Gene ID /WP=CE06636 /TR=Q23548 /GB=CAA98062.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 56      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1792
1 2 3 4 range
A 47
(-2.9)
A 		872
(0.5)
P 		1492.8
(3)
P 		26.1
(-3)
A 		1467
B 23.5
(-3)
A 		866.1
(-0.2)
P 		1815.5
(3)
P 		46.8
(-2.9)
A 		1792
C 61.2
(-2.9)
A 		854.5
(0.1)
P 		1608.8
(3)
P 		38.9
(-3)
A 		1570
avr 43.9
(-3) 		864.2
(0.1) 		1639
(3) 		37.3
(-3) 		1602

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 13
(-2.7)
A 		17.7
(-2.3)
A 		66.2
(2.4)
A 		63.6
(2.2)
A 		72
(3)
A 		10.3
(-3)
A 		62
B 36
(-0.9)
A 		57.6
(0.7)
A 		19
(-2.2)
A 		89.8
(3)
A 		60
(0.8)
A 		7.5
(-3)
A 		82
C 20.1
(-2.3)
A 		78.8
(3)
A 		12
(-3)
A 		58.2
(1.1)
A 		23.8
(-1.9)
A 		23.7
(-1.9)
A 		67
avr 23
(-2) 		51.4
(1) 		32.4
(-1) 		70.5
(3) 		51.9
(1) 		13.8
(-3) 		57
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 557
1 2 3 4 range
A 17.1
(-2.8)
A 		189.3
(-0.1)
P 		390.2
(3)
P 		3.8
(-3)
A 		386
B 7.5
(-3)
A 		213.9
(-0)
P 		420.7
(3)
P 		10
(-3)
A 		413
C 20.3
(-2.9)
A 		245.7
(-0.4)
P 		560.7
(3)
P 		6.6
(-3)
A 		554
avr 15
(-2.9) 		216.3
(-0.2) 		457.2
(3) 		6.8
(-3) 		450

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 2.4
(-3)
A 		6.3
(-1.8)
A 		14.4
(0.7)
A 		16.1
(1.3)
A 		21.7
(3)
A 		2.5
(-3)
A 		19
B 12.5
(-0.3)
A 		19.2
(1.6)
A 		4.6
(-2.5)
A 		23.8
(2.8)
A 		24.4
(3)
A 		2.8
(-3)
A 		22
C 7.4
(-1.7)
A 		24
(3)
A 		3
(-3)
A 		11.7
(-0.5)
A 		7.7
(-1.7)
A 		7.9
(-1.6)
A 		21
avr 7.4
(-1.7) 		16.5
(2.4) 		7.3
(-1.7) 		17.2
(2.7) 		17.9
(3) 		4.4
(-3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179249_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9187
Sequence Type Exemplar sequence
Representative Public ID ZK617.2 NCBI
Target Description ZK617.2 /REP_DB=WormBase Gene ID /WP=CE06636 /TR=Q23548 /GB=CAA98062.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069875(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069875 NCBI Caenorhabditis elegans ZK617.2 (ZK617.2) mRNA, complete cds. 11/11 None
SNAP00000023405 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12014253:12015629:-1 11/11 None
GENEFINDER00000023543 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12014253:12015629:-1 11/11 None
ZK617.2 ENSEMBL cdna:known chromosome:CEL140:IV:12014253:12015629:-1 gene:ZK617.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12014258-12015635(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK617.2
Entrez Gene 191364 Entrez gene
SwissProt Q23548 EMBL-EBI
WormBase CE06636 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
16042 lipid catabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
16298 lipase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98062 Hypothetical protein ZK617.2 [Caenorhabditis elegans] ref|NP_502276.1| ZK617.2 [Caenorhabditis elegans] 0.0
blast CAE62162 Hypothetical protein CBG06209 [Caenorhabditis briggsae] 1.0E-131
blast CAE62161 Hypothetical protein CBG06208 [Caenorhabditis briggsae] 1.0E-128
Protein Domains
Database ID Description E-Value
Pfam IPR002918 EMBL-EBI Lipase, class 2 4.4E-120
Sequence
Target Sequence 
>C. ELEGANS:179249_AT
aatgttgcattgggaccatctctccattcaagagttcacacgtacatttctgtggccgga
gccaatcagggatcccagctttgcgcgcttccattcttcgatatttgcaatatgaagact
ggattgatgtgtaattcaaaattcttggaagatatcaactggttcaagaactacgaagga
tcatacaaggcattcaacttggcatccactgctgatttcgtcgtaggttatatggcttgt
ggaaagaaggcttcggaattcaccggtgcccatgaatggaaggttgaaggaaggaaccac
gagcagactgagtttgacactgctgctattcaattgcaaatgctcagagaatccactgct
ggtctttccaagagccgcccatctgccaagctcgaaaagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGTTGCATTGGGACCATCTCTCC 88 165 502 Antisense
GGACCATCTCTCCATTCAAGAGTTC 436 523 514 Antisense
GTTCACACGTACATTTCTGTGGCCG 43 445 535 Antisense
TGTGGCCGGAGCCAATCAGGGATCC 553 541 552 Antisense
ATTCAACTTGGCATCCACTGCTGAT 53 13 693 Antisense
TCCACTGCTGATTTCGTCGTAGGTT 305 589 706 Antisense
GAATTCACCGGTGCCCATGAATGGA 101 325 757 Antisense
GGAAGGAACCACGAGCAGACTGAGT 656 531 790 Antisense
GACTGAGTTTGACACTGCTGCTATT 619 375 807 Antisense
CAGAGAATCCACTGCTGGTCTTTCC 407 205 846 Antisense
GCCCATCTGCCAAGCTCGAAAAGAA 102 287 878 Antisense
Sequence Source Affymetrix Proprietary Database