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[179247_at]

Description F23A7.5 /REP_DB=WormBase Gene ID /WP=CE09579 /TR=Q93554 /GB=CAB02976.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 22      4grp_total > 43      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 16.9
(-2.2)
A 		82.1
(3)
A 		7.4
(-3)
A 		56.3
(0.9)
A 		75
B 73.8
(3)
A 		22.8
(-3)
A 		62.2
(1.6)
P 		43.6
(-0.6)
A 		51
C 41.8
(-1.9)
A 		83.7
(3)
A 		65.8
(0.9)
P 		32.3
(-3)
A 		51
avr 44.2
(-3) 		62.9
(3) 		45.1
(-2.7) 		44.1
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 51.3
(0.9)
A 		48.4
(0.5)
A 		31.3
(-1.8)
A 		25.4
(-2.6)
A 		66.2
(3)
A 		22.8
(-3)
A 		43
B 44.8
(0.5)
A 		43.3
(0.4)
A 		70.4
(3)
A 		8
(-3)
A 		18.3
(-2)
A 		24
(-1.5)
A 		62
C 37.9
(0)
P 		71
(3)
A 		57.9
(1.8)
M 		26.8
(-1)
A 		4
(-3)
A 		13
(-2.2)
A 		67
avr 44.7
(1.3) 		54.2
(3) 		53.2
(2.8) 		20.1
(-3) 		29.5
(-1.3) 		19.9
(-3) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 6.1
(-1.4)
A 		17.8
(3)
A 		1.9
(-3)
A 		8.2
(-0.6)
A 		16
B 23.5
(3)
A 		5.6
(-3)
A 		14.4
(-0.1)
P 		9.3
(-1.8)
A 		18
C 13.8
(-0.3)
A 		24.1
(3)
A 		22.9
(2.6)
P 		5.5
(-3)
A 		19
avr 14.5
(2) 		15.8
(3) 		13.1
(1) 		7.7
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 9.5
(-1.4)
A 		17.2
(1.8)
A 		6.8
(-2.5)
A 		6.4
(-2.7)
A 		20
(3)
A 		5.6
(-3)
A 		14
B 15.6
(2.4)
A 		14.4
(1.9)
A 		17.1
(3)
A 		2.1
(-3)
A 		7.4
(-0.9)
A 		9
(-0.2)
A 		15
C 14
(0.7)
P 		21.7
(3)
A 		14.7
(0.9)
M 		5.4
(-1.8)
A 		1.3
(-3)
A 		4.3
(-2.1)
A 		20
avr 13
(0.8) 		17.8
(3) 		12.9
(0.8) 		4.6
(-3) 		9.6
(-0.7) 		6.3
(-2.2) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179247_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17742
Sequence Type Exemplar sequence
Representative Public ID F23A7.5 NCBI
Target Description F23A7.5 /REP_DB=WormBase Gene ID /WP=CE09579 /TR=Q93554 /GB=CAB02976.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078243(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078243 NCBI Caenorhabditis elegans F23A7.5 (F23A7.5) mRNA, complete cds. 9/11 A 
F23A7.5 ENSEMBL cdna:known chromosome:CEL140:X:16229376:16236769:1 gene:F23A7.5 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000042977 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16230055-16236803(+) 36.21 100.0
Public Domain and Genome References
Gene Title
Ensembl F23A7.5
Entrez Gene 184880 Entrez gene
SwissProt Q93554 EMBL-EBI
WormBase CE34175 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02976 Hypothetical protein F23A7.5 [Caenorhabditis elegans] ref|NP_510644.2| F23A7.5 [Caenorhabditis elegans] 0.0
blast CAA84318 Hypothetical protein F34D10.4 [Caenorhabditis elegans] ref|NP_497758.1| F34D10.4 [Caenorhabditis elegans] 2.0E-30
blast NP_490918 Y20F4.4 [Caenorhabditis elegans] gb|AAL00866.2| Hypothetical protein Y20F4.4 [Caenorhabditis elegans] 5.0E-17
Sequence
Target Sequence 
>C. ELEGANS:179247_AT
gtggcggcaattcaaaccgcacggcctcccttatcgatccaccccagatcggtttatcga
aatcgaagcctacactaccagatacagctgagacagctcaagaaagaacagacgctcgta
gattgttagtgatgggaaagtatatcaaaaaaaatccttccctcgctttaacattagggc
ctgaagatgcggccaaacttaatatagacgtggtaagtttgtgcaaaaaattcgaaatac
tgtacttaagtatcgctgcacccaatgctagcccaagttttaagcattttaaaattcatc
cccgtacagtccttttgaagctctcaagaaaaaacttattccatctacctctggatcaat
cgagaaaagacgcagtcaatctcgttccaggagccgggattcgagacgacacagtcgatc
tcgttccgggagccggggttcacgacgacgcagtgatcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGCGGCAATTCAAACCGCACGGC 167 491 3347 Antisense
ATCCACCCCAGATCGGTTTATCGAA 662 35 3383 Antisense
CGAAATCGAAGCCTACACTACCAGA 674 249 3404 Antisense
TATCAAAAAAAATCCTTCCCTCGCT 32 653 3489 Antisense
TGTACTTAAGTATCGCTGCACCCAA 703 559 3587 Antisense
CCCGTACAGTCCTTTTGAAGCTCTC 150 201 3647 Antisense
AAAAAACTTATTCCATCTACCTCTG 271 129 3675 Antisense
AAAGACGCAGTCAATCTCGTTCCAG 441 123 3712 Antisense
CAGGAGCCGGGATTCGAGACGACAC 129 209 3734 Antisense
GAGACGACACAGTCGATCTCGTTCC 707 393 3749 Antisense
GGGTTCACGACGACGCAGTGATCGC 262 497 3782 Antisense
Sequence Source Affymetrix Proprietary Database