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[179245_at]

Description F57B1.6 /REP_DB=WormBase Gene ID /WP=CE11296 /TR=Q20926 /GB=CAB01513.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 80      6grp_high1_10_10 > 18      4grp_high_8_8 > 06      6grp_highest_nonorm > 90      6grp_total > 18      4grp_total > 11      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 156
1 2 3 4 range
A 99.3
(-2.8)
P 		123.3
(-1.7)
P 		93.6
(-3)
P 		231.2
(3)
P 		138
B 124
(-2.4)
P 		120.6
(-3)
P 		146.3
(1.5)
P 		154.7
(3)
P 		34
C 122.6
(-0.1)
P 		110.2
(-0.8)
P 		74.9
(-3)
M 		173
(3)
P 		98
avr 115.3
(-2.2) 		118
(-2) 		104.9
(-3) 		186.3
(3) 		81

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 188.6
(3)
P 		121.3
(-3)
P 		159
(0.4)
P 		153.8
(-0.1)
P 		179.2
(2.2)
P 		143.8
(-1)
P 		67
B 172
(2.4)
P 		178
(3)
P 		126.7
(-2)
P 		134.5
(-1.3)
P 		116.7
(-3)
P 		143.5
(-0.4)
P 		61
C 166.6
(2.4)
P 		170.3
(3)
P 		134.4
(-3)
P 		160.1
(1.3)
P 		159.5
(1.2)
P 		147.9
(-0.7)
P 		36
avr 175.7
(3) 		156.5
(-0.2) 		140
(-3) 		149.5
(-1.4) 		151.8
(-1) 		145.1
(-2.1) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 36.2
(3)
P 		26.8
(-1.8)
P 		24.5
(-3)
P 		33.8
(1.8)
P 		12
B 39.5
(3)
P 		29.8
(-3)
P 		33.9
(-0.5)
P 		33
(-1)
P 		10
C 40.6
(3)
P 		31.7
(-0.7)
P 		26.1
(-3)
M 		29.2
(-1.7)
P 		15
avr 38.8
(3) 		29.4
(-2.3) 		28.2
(-3) 		32
(-0.8) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 34.8
(-2.9)
P 		43.1
(-0.4)
P 		34.6
(-3)
P 		39
(-1.6)
P 		54.1
(3)
P 		35
(-2.9)
P 		20
B 59.8
(3)
P 		59.2
(2.9)
P 		30.8
(-3)
P 		35.6
(-2)
P 		47.4
(0.4)
P 		53.5
(1.7)
P 		29
C 61.8
(3)
P 		52
(1)
P 		34.2
(-2.6)
P 		32.2
(-3)
P 		51.6
(0.9)
P 		49.5
(0.5)
P 		30
avr 52.1
(3) 		51.4
(2.8) 		33.2
(-3) 		35.6
(-2.2) 		51
(2.7) 		46
(1.1) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179245_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14461
Sequence Type Exemplar sequence
Representative Public ID F57B1.6 NCBI
Target Description F57B1.6 /REP_DB=WormBase Gene ID /WP=CE11296 /TR=Q20926 /GB=CAB01513.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073885(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073885 NCBI Caenorhabditis elegans F57B1.6 (F57B1.6) mRNA, complete cds. 11/11 None
SNAP00000007053 ENSEMBL cdna:SNAP chromosome:CEL140:V:13214773:13215933:1 10/11 None
GENEFINDER00000007062 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13214773:13215933:1 11/11 None
F57B1.6 ENSEMBL cdna:known chromosome:CEL140:V:13213728:13216053:1 gene:F57B1.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13213727-13215933(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F57B1.6
Entrez Gene 179805 Entrez gene
SwissProt Q20926 EMBL-EBI
WormBase CE11296 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01513 Hypothetical protein F57B1.6 [Caenorhabditis elegans] ref|NP_506286.1| F57B1.6 [Caenorhabditis elegans] 1.0E-122
blast CAB01513 Hypothetical protein F57B1.6 [Caenorhabditis elegans] ref|NP_506286.1| F57B1.6 [Caenorhabditis elegans] 3.0E-84
blast CAE64648 Hypothetical protein CBG09418 [Caenorhabditis briggsae] 1.0E-76
blast CAE64648 Hypothetical protein CBG09418 [Caenorhabditis briggsae] 3.0E-69
blast CAB01513 Hypothetical protein F57B1.6 [Caenorhabditis elegans] ref|NP_506286.1| F57B1.6 [Caenorhabditis elegans] 4.0E-67
blast CAE64648 Hypothetical protein CBG09418 [Caenorhabditis briggsae] 2.0E-56
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506286.1 4 68-90,105-127,140-162,196-218
F57B1.6 4 68-90,105-127,140-162,196-218
SNAP00000007053 4 25-47,62-84,91-113,117-139
GENEFINDER00000007062 4 12-34,54-76,89-111,146-168
Sequence
Target Sequence 
>C. ELEGANS:179245_AT
ttctggattatgcctgacttcttcagtttttgattttatcgtcgtctcaagactttatta
tacagttcccgatcataaagtgctcatcaatcctcgaatggcattttggcttttcccatc
ctctacattttcccttattctctcatttttatcacttttgttcttatcagctggtccacg
tgttatcaaattcgcagtggacaatcaaatgatactgtcactcgcccatgcgcttctcat
gtgcggagcatgcattctctcctcgtttgtcagttttatttgtgctcaaaatgcaaacga
tattgcaggatatgctgcatttgccacaccagctcaattccaactggcttctgcttggta
ctacagtcgtcttcgagcactcgtcgttatttcagtcattcaaagccttttgaacggaat
catcgtctctacactatatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTGGATTATGCCTGACTTCTTCA 374 695 219 Antisense
AGTGCTCATCAATCCTCGAATGGCA 708 59 297 Antisense
GAATGGCATTTTGGCTTTTCCCATC 134 333 314 Antisense
CCCTTATTCTCTCATTTTTATCACT 499 259 350 Antisense
CACTTTTGTTCTTATCAGCTGGTCC 343 197 371 Antisense
ATGTGCGGAGCATGCATTCTCTCCT 518 49 457 Antisense
GATATGCTGCATTTGCCACACCAGC 303 425 527 Antisense
CAGCTCAATTCCAACTGGCTTCTGC 677 203 548 Antisense
TGCTTGGTACTACAGTCGTCTTCGA 483 577 570 Antisense
GAGCACTCGTCGTTATTTCAGTCAT 22 391 593 Antisense
GGAATCATCGTCTCTACACTATATC 288 533 634 Antisense
Sequence Source Affymetrix Proprietary Database