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[179243_at]

Description R106.1 /REP_DB=WormBase Gene ID /WP=CE07453 /TR=Q23032 /GB=AAB04991.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 50      4grp_total > 49      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 6.5
(-1)
A 		3.6
(-3)
A 		12.5
(3)
A 		8.1
(0)
A 		9
B 4.1
(-0.4)
A 		6.9
(3)
A 		3.7
(-0.8)
A 		1.9
(-3)
A 		5
C 4.8
(-2.4)
A 		10.1
(3)
A 		4.2
(-3)
A 		5.5
(-1.7)
A 		6
avr 5.1
(-3) 		6.9
(3) 		6.8
(2.7) 		5.2
(-2.7) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 36.8
(3)
A 		7.3
(-2.4)
A 		11.3
(-1.7)
A 		17.9
(-0.5)
A 		4.2
(-3)
A 		6.8
(-2.5)
A 		33
B 4.1
(-2.7)
A 		2.4
(-3)
A 		36.4
(3)
A 		2.4
(-3)
A 		4.4
(-2.6)
A 		2.6
(-3)
A 		34
C 3.8
(-2.6)
A 		4.2
(-2.5)
A 		7.1
(-1.4)
A 		19.3
(3)
A 		2.8
(-3)
A 		3.3
(-2.8)
A 		17
avr 14.9
(1.6) 		4.6
(-2.7) 		18.3
(3) 		13.2
(0.9) 		3.8
(-3) 		4.2
(-2.8) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 2.4
(0.8)
A 		0.8
(-3)
A 		3.3
(3)
A 		1.2
(-2)
A 		3
B 1.3
(1.2)
A 		1.7
(3)
A 		0.9
(-0.7)
A 		0.4
(-3)
A 		1
C 1.6
(-0.9)
A 		2.9
(3)
A 		1.5
(-1.2)
A 		0.9
(-3)
A 		2
avr 1.8
(2.5) 		1.8
(2.5) 		1.9
(3) 		0.8
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 6.8
(3)
A 		2.6
(-1.6)
A 		2.5
(-1.7)
A 		4.5
(0.5)
A 		1.3
(-3)
A 		1.6
(-2.7)
A 		6
B 1.4
(-2.4)
A 		0.8
(-2.9)
A 		8.8
(3)
A 		0.6
(-3)
A 		1.8
(-2.1)
A 		1
(-2.7)
A 		8
C 1.4
(-2)
A 		1.3
(-2.2)
A 		1.8
(-1.2)
A 		3.9
(3)
A 		0.9
(-3)
A 		1.1
(-2.6)
A 		3
avr 3.2
(0.8) 		1.6
(-2.3) 		4.4
(3) 		3
(0.4) 		1.3
(-2.8) 		1.2
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179243_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17693
Sequence Type Exemplar sequence
Representative Public ID R106.1 NCBI
Target Description R106.1 /REP_DB=WormBase Gene ID /WP=CE07453 /TR=Q23032 /GB=AAB04991.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078431(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078431 NCBI Caenorhabditis elegans R106.1 (R106.1) mRNA, complete cds. 11/11 None
GENEFINDER00000044314 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17479753:17480220:1 11/11 None
R106.1 ENSEMBL cdna:known chromosome:CEL140:X:17479753:17480220:1 gene:R106.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17479751-17480219(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R106.1
Entrez Gene 187896 Entrez gene
SwissProt Q23032 EMBL-EBI
WormBase CE07453 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04991 Hypothetical protein R106.1 [Caenorhabditis elegans] ref|NP_510832.1| R106.1 [Caenorhabditis elegans] 1.0E-76
Sequence
Target Sequence 
>C. ELEGANS:179243_AT
gagaaaacttccaggggaccactgcacgctcacgccccctcactcacttcactcatctca
ctcattgttccgtgcgcgagagagacggcgatcaatgttgttgtggtgatcacgcgccct
cgctgtctgcgatgctcccagtgctcatctctcgccacattttctatacttttctctgcc
ttctctgctctcactctccactttctctacacatctcttctaaattccacacgcgcctcg
ttgtcggagtctcgctctctatcccacttgcctcactattaaccgctctccaaccaccct
ccagccggcgagagggcagctggttggccggtagccgagatactgcactatttgaggaga
agccgggcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAAAACTTCCAGGGGACCACTGC 394 335 80 Antisense
CATTGTTCCGTGCGCGAGAGAGACG 420 217 142 Antisense
GAGAGACGGCGATCAATGTTGTTGT 151 395 159 Antisense
ATGTTGTTGTGGTGATCACGCGCCC 396 47 174 Antisense
ACATTTTCTATACTTTTCTCTGCCT 354 105 236 Antisense
TACACATCTCTTCTAAATTCCACAC 644 641 287 Antisense
CCCTCCAGCCGGCGAGAGGGCAGCT 660 259 376 Antisense
CCGGCGAGAGGGCAGCTGGTTGGCC 688 263 384 Antisense
GCTGGTTGGCCGGTAGCCGAGATAC 477 293 398 Antisense
GGTAGCCGAGATACTGCACTATTTG 215 505 409 Antisense
GCACTATTTGAGGAGAAGCCGGGCG 7 315 424 Antisense
Sequence Source Affymetrix Proprietary Database