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[179242_at] 7TM receptor, srx family

Description T10C6.4 /REP_DB=WormBase Gene ID /WP=CE16379 /TR=O45768 /GB=CAB07661.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 37      4grp_total > 18      6grp_cgc > 26      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 2.6
(-3)
A 		17.1
(-0.5)
A 		6.1
(-2.4)
A 		38
(3)
A 		35
B 6.2
(-2.4)
A 		22.6
(0.9)
A 		3.2
(-3)
A 		33.3
(3)
A 		30
C 4.4
(-3)
A 		4.9
(-2.6)
A 		7
(-1.1)
A 		12.7
(3)
A 		8
avr 4.4
(-3) 		14.9
(-0.3) 		5.4
(-2.7) 		28
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 9.1
(0.3)
A 		11.1
(1.4)
A 		3.6
(-2.6)
A 		14.2
(3)
A 		6.2
(-1.2)
A 		2.9
(-3)
A 		11
B 28.3
(3)
A 		6.2
(-2.3)
A 		8.3
(-1.8)
A 		5.2
(-2.6)
A 		3.5
(-3)
A 		5
(-2.6)
A 		25
C 2.8
(-2.9)
A 		12.8
(0)
A 		2.5
(-3)
A 		9.9
(-0.8)
A 		10.7
(-0.6)
A 		23
(3)
A 		21
avr 13.4
(3) 		10
(0.6) 		4.8
(-3) 		9.8
(0.5) 		6.8
(-1.6) 		10.3
(0.8) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 0.9
(-3)
A 		3.7
(0.6)
A 		1.6
(-2.1)
A 		5.6
(3)
A 		5
B 2
(-1.9)
A 		5.6
(1.6)
A 		0.8
(-3)
A 		7.1
(3)
A 		6
C 1.5
(-2.5)
A 		1.4
(-3)
A 		2.5
(3)
A 		2.1
(0.8)
A 		1
avr 1.5
(-3) 		3.6
(0.7) 		1.6
(-2.8) 		4.9
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 1.7
(-1.2)
A 		4
(3)
A 		0.8
(-2.8)
A 		3.6
(2.3)
A 		1.9
(-0.8)
A 		0.7
(-3)
A 		3
B 9.8
(3)
A 		2
(-2.6)
A 		2
(-2.6)
A 		1.4
(-3)
A 		1.4
(-3)
A 		1.9
(-2.6)
A 		8
C 1
(-2.7)
A 		3.9
(-0.2)
A 		0.6
(-3)
A 		2
(-1.8)
A 		3.5
(-0.5)
A 		7.7
(3)
A 		7
avr 4.2
(3) 		3.3
(1.3) 		1.1
(-3) 		2.3
(-0.7) 		2.3
(-0.7) 		3.4
(1.5) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179242_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14486
Sequence Type Exemplar sequence
Representative Public ID T10C6.4 NCBI
Target Description T10C6.4 /REP_DB=WormBase Gene ID /WP=CE16379 /TR=O45768 /GB=CAB07661.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074622(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074622 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-44) (srx-44) mRNA, complete cds. 11/11 None
GENEFINDER00000027929 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16020554:16025268:1 11/11 None
T10C6.4 ENSEMBL cdna:known chromosome:CEL140:V:16023319:16025235:1 gene:T10C6.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16024055-16025235(+) 99.5 100.0
Public Domain and Genome References
Gene Title 7TM receptor, srx family
Gene Symbol srx-44
Ensembl T10C6.4
Entrez Gene 188375 Entrez gene
SwissProt O45768 EMBL-EBI
WormBase CE36323 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07660 Hypothetical protein T10C6.3 [Caenorhabditis elegans] ref|NP_507022.2| Serpentine Receptor, class X family member (srx-43) [Caenorhabditis elegans] 1.0E-153
blast CAB07661 Hypothetical protein T10C6.4 [Caenorhabditis elegans] ref|NP_507023.2| Serpentine Receptor, class X family member (srx-44) [Caenorhabditis elegans] 1.0E-130
blast CAB07661 Hypothetical protein T10C6.4 [Caenorhabditis elegans] ref|NP_507023.2| Serpentine Receptor, class X family member (srx-44) [Caenorhabditis elegans] 1.0E-120
blast CAE74812 Hypothetical protein CBG22647 [Caenorhabditis briggsae] 2.0E-87
blast CAE74812 Hypothetical protein CBG22647 [Caenorhabditis briggsae] 1.0E-83
blast CAB07660 Hypothetical protein T10C6.3 [Caenorhabditis elegans] ref|NP_507022.2| Serpentine Receptor, class X family member (srx-43) [Caenorhabditis elegans] 2.0E-40
Protein Domains
Database ID Description E-Value
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 1.2E-4
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507023.2 7 5-24,44-66,70-92,112-134,166-188,209-228,243-265
T10C6.4 7 5-24,44-66,70-92,112-134,166-188,209-228,243-265
GENEFINDER00000027929 13 23-45,95-117,137-159,164-186,190-212,232-251,311-333,340-362,372-394,414-436,468-490,511-530,545-567
Sequence
Target Sequence 
>C. ELEGANS:179242_AT
acccactttctgatggctttcaacaggttttgtgcttcaagtatgccatttggatacaga
aaaatctttagcaaaaattacgtactcacttacatcatcataaattggacacttcccccc
gtaatttattcgtattttttcttcttttataattgttccttcccgtttttccaatttggg
tgggttttcatggaagctcagcggaatgagacatgtggagcaaaacttctactgttaagc
ctatctgttcagttcgtgattatctttattatcacaattctggatatttccacgtttatc
attcttatcacttgtcgaaaatcgatatttaaagggcaaagtaaagagaataaacaacgc
gatatcaattttgcgatgcaggtgataattcagggaattgttatggtgttttttggtgtt
tggtatgtttccggttattcgtttttgcctggcaacaggctggattggaaaatttttatg
acaactacggtctcgtcttctttaactaattgcctagcaccaatagtaatatgttttttc
aatgcagaatatcgccgatggattattcgtttgattcgccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCCACTTTCTGATGGCTTTCAACA 299 89 190 Antisense
GGCTTTCAACAGGTTTTGTGCTTCA 585 537 204 Antisense
ATTACGTACTCACTTACATCATCAT 291 13 266 Antisense
CATCATAAATTGGACACTTCCCCCC 363 211 285 Antisense
GGGTGGGTTTTCATGGAAGCTCAGC 244 495 367 Antisense
TTCTACTGTTAAGCCTATCTGTTCA 392 689 416 Antisense
ATTTCCACGTTTATCATTCTTATCA 517 17 475 Antisense
GTTATTCGTTTTTGCCTGGCAACAG 685 441 623 Antisense
TATGACAACTACGGTCTCGTCTTCT 375 657 666 Antisense
GTCTCGTCTTCTTTAACTAATTGCC 696 467 679 Antisense
GATGGATTATTCGTTTGATTCGCCG 596 407 746 Antisense
Sequence Source Affymetrix Proprietary Database