[Home] | [Total List]

[179241_at]

Description W07G1.1 /REP_DB=WormBase Gene ID /WP=CE24035 /TR=Q9XUK4 /GB=CAB04933.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 26      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 3.6
(-3)
A 		8.7
(2.3)
A 		6.4
(-0.1)
A 		9.4
(3)
A 		6
B 3.9
(0)
A 		4.3
(3)
A 		3.7
(-1.5)
A 		3.5
(-3)
A 		1
C 4.1
(-2.3)
A 		4.8
(-1.4)
A 		3.5
(-3)
A 		8.5
(3)
A 		5
avr 3.9
(-3) 		5.9
(0.8) 		4.5
(-1.9) 		7.1
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 4.5
(0.4)
A 		2.7
(-3)
A 		2.7
(-3)
A 		4.9
(1.1)
A 		5.9
(3)
A 		3.4
(-1.7)
A 		3
B 4
(-0.8)
A 		5.9
(3)
A 		4.6
(0.4)
A 		5.1
(1.4)
A 		5.9
(3)
A 		2.9
(-3)
A 		3
C 4
(-2.3)
A 		6.5
(-1.1)
A 		6.4
(-1.1)
A 		14.6
(3)
A 		4.9
(-1.9)
A 		2.7
(-3)
A 		12
avr 4.2
(-1.6) 		5
(-0.7) 		4.6
(-1.2) 		8.2
(3) 		5.6
(0) 		3
(-3) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 1.3
(-3)
A 		1.9
(3)
A 		1.7
(1)
A 		1.4
(-2)
A 		1
B 1.3
(3)
A 		1.1
(1)
A 		0.8
(-2)
A 		0.7
(-3)
A 		1
C 1.3
(0)
A 		1.4
(3)
A 		1.2
(-3)
A 		1.4
(3)
A 		0
avr 1.3
(-1) 		1.5
(3) 		1.2
(-3) 		1.2
(-3) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 0.8
(-2)
A 		1
(-1)
A 		0.6
(-3)
A 		1.2
(-0)
A 		1.8
(3)
A 		0.8
(-2)
A 		1
B 1.4
(-1.6)
A 		2
(1.2)
A 		1.1
(-3)
A 		1.3
(-2.1)
A 		2.4
(3)
A 		1.1
(-3)
A 		1
C 1.5
(-1.2)
A 		2
(0.3)
A 		1.6
(-0.9)
A 		2.9
(3)
A 		1.6
(-0.9)
A 		0.9
(-3)
A 		2
avr 1.2
(-1.2) 		1.7
(1.8) 		1.1
(-1.8) 		1.8
(2.4) 		1.9
(3) 		0.9
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179241_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3199
Sequence Type Exemplar sequence
Representative Public ID W07G1.1 NCBI
Target Description W07G1.1 /REP_DB=WormBase Gene ID /WP=CE24035 /TR=Q9XUK4 /GB=CAB04933.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064516(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064516 NCBI Caenorhabditis elegans W07G1.1 (W07G1.1) mRNA, complete cds. 11/11 None
SNAP00000025657 ENSEMBL cdna:SNAP chromosome:CEL140:II:13938590:13939523:-1 9/11 None
GENEFINDER00000025682 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13937915:13939319:-1 10/11 None
W07G1.1 ENSEMBL cdna:known chromosome:CEL140:II:13937887:13939319:-1 gene:W07G1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13937883-13939316(-) 92.65 100.0
Public Domain and Genome References
Gene Title
Ensembl W07G1.1
Entrez Gene 189278 Entrez gene
SwissProt Q9XUK4 EMBL-EBI
WormBase CE38232 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04933 Hypothetical protein W07G1.1 [Caenorhabditis elegans] ref|NP_496917.2| W07G1.1 [Caenorhabditis elegans] 1.0E-112
blast CAB04933 Hypothetical protein W07G1.1 [Caenorhabditis elegans] ref|NP_496917.2| W07G1.1 [Caenorhabditis elegans] 9.0E-98
blast CAB04933 Hypothetical protein W07G1.1 [Caenorhabditis elegans] ref|NP_496917.2| W07G1.1 [Caenorhabditis elegans] 5.0E-84
blast CAE73319 Hypothetical protein CBG20746 [Caenorhabditis briggsae] 4.0E-75
blast CAE73319 Hypothetical protein CBG20746 [Caenorhabditis briggsae] 2.0E-67
blast CAB04933 Hypothetical protein W07G1.1 [Caenorhabditis elegans] ref|NP_496917.2| W07G1.1 [Caenorhabditis elegans] 2.0E-67
blast CAE73319 Hypothetical protein CBG20746 [Caenorhabditis briggsae] 3.0E-51
blast CAE73319 Hypothetical protein CBG20746 [Caenorhabditis briggsae] 2.0E-41
blast CAE73316 Hypothetical protein CBG20743 [Caenorhabditis briggsae] 5.0E-14
blast CAE73316 Hypothetical protein CBG20743 [Caenorhabditis briggsae] 6.0E-14
Protein Domains
Database ID Description E-Value
Pfam IPR003533 EMBL-EBI Doublecortin 5.3E-26
Pfam IPR003533 EMBL-EBI Doublecortin 5.3E-26
Sequence
Target Sequence 
>C. ELEGANS:179241_AT
atgtagcatctagctcccattttacccctgctgcttatggtggacagcatcagccaattc
aaaaggaggttaagctgaaaaagaagaagaagaagcgctcacaaacggttcagcctcgga
aaactgaacacattgagctaggcgacgagatctcgattccgctgaatgagccagttgttc
tagaaaagaagaagaaaaaaaagaagaagctggtgcagaaaaatctagatcttcacggat
ccatagaaaccctggcggaaactgcggagatcgaactgcctagtgagatcgaggactccg
aggaggaagatgagcatgaacatcggagaagtgcaaccccggatcatcatcggcctgcca
ccaagcatagcgtggctccgtcgagggcttcaagtcgacgtggcagtagaagagatgagg
agaagagggaggaggaggatgaggagaggaagaaaaaggatgagaagaagaggaaatcgg
tgagcagcagccgccgcaagtctcaagcccaacaccatggccaaccgaattggggcgatc
tgtcgagcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTAGCATCTAGCTCCCATTTTAC 28 47 164 Antisense
TTACCCCTGCTGCTTATGGTGGACA 192 683 185 Antisense
AGAAGCGCTCACAAACGGTTCAGCC 487 73 254 Antisense
CGACGAGATCTCGATTCCGCTGAAT 671 251 306 Antisense
CACGGATCCATAGAAACCCTGGCGG 327 197 397 Antisense
ACTGCGGAGATCGAACTGCCTAGTG 543 97 424 Antisense
CGGAGAAGTGCAACCCCGGATCATC 473 243 487 Antisense
CCACCAAGCATAGCGTGGCTCCGTC 464 271 521 Antisense
CGAGGGCTTCAAGTCGACGTGGCAG 254 249 545 Antisense
GGAAATCGGTGAGCAGCAGCCGCCG 228 527 635 Antisense
GAATTGGGGCGATCTGTCGAGCTTC 355 323 690 Antisense
Sequence Source Affymetrix Proprietary Database