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[179240_at]

Description M03B6.1 /REP_DB=WormBase Gene ID /WP=CE12334 /TR=Q93895 /GB=CAB01765.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 70      4grp_high_8_8 > 34      6grp_total > 91      4grp_total > 47      6grp_high1_sub > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 64.1
(1)
P 		55.3
(-1.2)
M 		47.9
(-3)
A 		72.1
(3)
P 		24
B 102.5
(3)
P 		80
(-0.2)
P 		63.7
(-2.5)
P 		59.9
(-3)
M 		43
C 101.4
(3)
P 		47.6
(-3)
A 		65.5
(-1)
P 		57.6
(-1.9)
P 		54
avr 89.3
(3) 		61
(-2.6) 		59
(-3) 		63.2
(-2.2) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 54.4
(2.1)
A 		59.9
(2.9)
P 		19.8
(-3)
A 		60.3
(3)
A 		54.2
(2.1)
P 		42.9
(0.4)
M 		41
B 44.7
(-2.8)
P 		43.4
(-2.9)
P 		55.8
(-1.4)
P 		91.5
(3)
P 		83.9
(2.1)
P 		42.7
(-3)
P 		49
C 63.8
(3)
P 		63.1
(2.8)
P 		57.6
(1.4)
P 		46.7
(-1.5)
P 		44.8
(-2)
P 		41
(-3)
P 		23
avr 54.3
(0) 		55.5
(0.3) 		44.4
(-2.5) 		66.2
(3) 		61
(1.7) 		42.2
(-3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 23.3
(3)
P 		12
(-2.3)
M 		12.5
(-2.1)
A 		10.6
(-3)
P 		13
B 32.7
(3)
P 		19.8
(-0.9)
P 		14.8
(-2.4)
P 		12.8
(-3)
M 		20
C 33.6
(3)
P 		13.7
(-2)
A 		22.8
(0.3)
P 		9.7
(-3)
P 		24
avr 29.9
(3) 		15.2
(-1.7) 		16.7
(-1.2) 		11
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 10
(-1)
A 		21.3
(3)
P 		4.3
(-3)
A 		15.3
(0.9)
A 		16.4
(1.3)
P 		10.4
(-0.8)
M 		17
B 15.6
(-2.4)
P 		14.5
(-2.7)
P 		13.6
(-3)
P 		24.2
(0.1)
P 		34.1
(3)
P 		15.9
(-2.3)
P 		21
C 23.6
(3)
P 		19.3
(1.2)
P 		14.7
(-0.8)
P 		9.4
(-3)
P 		14.5
(-0.8)
P 		13.7
(-1.2)
P 		14
avr 16.4
(0.1) 		18.4
(1.2) 		10.9
(-3) 		16.3
(0) 		21.7
(3) 		13.3
(-1.7) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179240_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17748
Sequence Type Exemplar sequence
Representative Public ID M03B6.1 NCBI
Target Description M03B6.1 /REP_DB=WormBase Gene ID /WP=CE12334 /TR=Q93895 /GB=CAB01765.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077906(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077906 NCBI Caenorhabditis elegans M03B6.1 (M03B6.1) mRNA, complete cds. 11/11 None
GENEFINDER00000014980 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13841359:13842883:1 11/11 None
SNAP00000014974 ENSEMBL cdna:SNAP chromosome:CEL140:X:13841549:13842883:1 11/11 None
M03B6.1 ENSEMBL cdna:known chromosome:CEL140:X:13841549:13842883:1 gene:M03B6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13841548-13842883(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M03B6.1
Entrez Gene 187417 Entrez gene
SwissProt Q93895 EMBL-EBI
WormBase CE12334 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01765 Hypothetical protein M03B6.1 [Caenorhabditis elegans] ref|NP_510307.1| M03B6.1 [Caenorhabditis elegans] 1.0E-74
blast CAB01765 Hypothetical protein M03B6.1 [Caenorhabditis elegans] ref|NP_510307.1| M03B6.1 [Caenorhabditis elegans] 3.0E-74
blast CAE63078 Hypothetical protein CBG07363 [Caenorhabditis briggsae] 3.0E-27
blast CAE63078 Hypothetical protein CBG07363 [Caenorhabditis briggsae] 6.0E-27
Sequence
Target Sequence 
>C. ELEGANS:179240_AT
gagtgggttttgatgtattccggaagaccgtcatcttcaaggccgatcaaccgaaatgcc
gaaagttcaacttcaattgccgaaaaggagcgaaaacaagcagaggattttatcaatgat
aatttggatgttcctttggaagagcttgctgctcagaacaaggaacttcaaaggctgaaa
attattgaatatcataaaatgaaagccaggaaatgtccaacacttgacgagcaaccacgt
ggcccggatgggagaattatcttttccgaagagtacattgatttcatgctttaccgtgat
cttcagccactagtagatcttcgaattctcaaacacactgagataatcatccaagaaaga
attcgcgagcgtgatgcagcaaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTGGGTTTTGATGTATTCCGGAA 628 401 16 Antisense
GGAAGACCGTCATCTTCAAGGCCGA 263 527 37 Antisense
CAAGGCCGATCAACCGAAATGCCGA 547 183 53 Antisense
GAAAGTTCAACTTCAATTGCCGAAA 579 359 76 Antisense
GTTCCTTTGGAAGAGCTTGCTGCTC 526 441 145 Antisense
ACACTTGACGAGCAACCACGTGGCC 707 109 235 Antisense
CAACCACGTGGCCCGGATGGGAGAA 710 167 247 Antisense
GAGTACATTGATTTCATGCTTTACC 692 399 286 Antisense
CATGCTTTACCGTGATCTTCAGCCA 290 211 300 Antisense
TCTTCAGCCACTAGTAGATCTTCGA 314 617 315 Antisense
AATTCGCGAGCGTGATGCAGCAAAG 25 177 375 Antisense
Sequence Source Affymetrix Proprietary Database