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[179239_at]

Description F53H4.3 /REP_DB=WormBase Gene ID /WP=CE11032 /TR=Q93782 /GB=CAB03136.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 91      6grp_total > 93      4grp_total > 57      6grp_high1_sub > 05      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 819
1 2 3 4 range
A 169.6
(-2.2)
A 		800.3
(2.7)
P 		842.3
(3)
P 		71
(-3)
A 		771
B 147.5
(-3)
A 		665.8
(1.2)
P 		889.8
(3)
P 		147
(-3)
A 		743
C 200.4
(-2.7)
A 		682.5
(2.5)
P 		727.9
(3)
P 		170.1
(-3)
A 		558
avr 172.5
(-2.6) 		716.2
(2.1) 		820
(3) 		129.4
(-3) 		691

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 433
1 2 3 4 5 6 range
A 189.7
(-3)
A 		395.9
(-0.1)
P 		234.9
(-2.4)
M 		462.9
(0.8)
P 		623
(3)
P 		252.4
(-2.1)
P 		433
B 240.3
(-2.4)
A 		315.8
(-0.9)
P 		210.4
(-3)
P 		353.6
(-0.2)
P 		514.7
(3)
P 		230.6
(-2.6)
P 		304
C 248.2
(-2.3)
P 		335.5
(-1)
P 		197.4
(-3)
P 		441.6
(0.6)
P 		609.4
(3)
P 		251
(-2.2)
P 		412
avr 226.1
(-2.8) 		349.1
(-0.8) 		214.2
(-3) 		419.4
(0.3) 		582.4
(3) 		244.7
(-2.5) 		368
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 243
1 2 3 4 range
A 61.7
(-1.5)
A 		173.7
(1.7)
P 		220.2
(3)
P 		10.4
(-3)
A 		210
B 47
(-2.5)
A 		164.4
(1.6)
P 		206.2
(3)
P 		31.3
(-3)
A 		175
C 66.3
(-2)
A 		196.2
(1.5)
P 		253.7
(3)
P 		28.7
(-3)
A 		225
avr 58.3
(-2) 		178.1
(1.6) 		226.7
(3) 		23.5
(-3) 		203

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 174
1 2 3 4 5 6 range
A 35
(-3)
A 		140.8
(1.1)
P 		51.2
(-2.4)
M 		117.4
(0.2)
P 		188
(3)
P 		61.5
(-2)
P 		153
B 83.6
(-1.8)
A 		105.1
(-0.9)
P 		51.1
(-3)
P 		93.6
(-1.4)
P 		209.1
(3)
P 		86
(-1.7)
P 		158
C 92
(-1.3)
P 		102.4
(-0.9)
P 		50.2
(-3)
P 		88.8
(-1.4)
P 		197.2
(3)
P 		84
(-1.6)
P 		147
avr 70.2
(-2.2) 		116.1
(-0.3) 		50.8
(-3) 		99.9
(-1) 		198.1
(3) 		77.2
(-1.9) 		147
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179239_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17655
Sequence Type Exemplar sequence
Representative Public ID F53H4.3 NCBI
Target Description F53H4.3 /REP_DB=WormBase Gene ID /WP=CE11032 /TR=Q93782 /GB=CAB03136.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078210(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078210 NCBI Caenorhabditis elegans F53H4.3 (F53H4.3) mRNA, complete cds. 11/11 None
SNAP00000026508 ENSEMBL cdna:SNAP chromosome:CEL140:X:15885633:15887503:-1 11/11 None
GENEFINDER00000026510 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15885633:15887508:-1 11/11 None
F53H4.3 ENSEMBL cdna:known chromosome:CEL140:X:15885633:15887503:-1 gene:F53H4.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15885632-15887503(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F53H4.3
Entrez Gene 186192 Entrez gene
SwissProt Q93782 EMBL-EBI
WormBase CE11032 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03136 Hypothetical protein F53H4.3 [Caenorhabditis elegans] ref|NP_510611.1| F53H4.3 [Caenorhabditis elegans] 1.0E-129
blast CAB03136 Hypothetical protein F53H4.3 [Caenorhabditis elegans] ref|NP_510611.1| F53H4.3 [Caenorhabditis elegans] 1.0E-126
blast CAE69726 Hypothetical protein CBG15997 [Caenorhabditis briggsae] 1.0E-102
blast CAE69726 Hypothetical protein CBG15997 [Caenorhabditis briggsae] 2.0E-99
Sequence
Target Sequence 
>C. ELEGANS:179239_AT
gacaacagttcttgtctggcctaccaccgttgccgatgactcatgatgagataatccatg
tactgaccaccgaatccccgacaacaacgatcaagccaacagccaaaccaacaacacctc
tgccaccagtgcctgaccaaatggctgtgaatgatattccagaagctcctccagtgccag
aagaaaacatcggaggtacttacgatgaagatggcaattttgtgtctgaaacaaacttgg
tggtcgataggaaaaggaacttggctcgcggagcccgtaactaccaattaagtgatactg
caacgacacgacaatacgcatatgttgctcaattccatcaaccaattcacagtaatcaaa
acagagtggctcgtcaacacactactccacgaccattcacatatccaccactggtcttca
gagcaaaaccacagccaaacaatcgagacacttatttgaataatttgcttctggaaattg
aagaatacgacgactttttggatcaagtaaaccagtacaaaactcgctacccgggagccc
aggtgccaaatccttaccgctcactaccagagggcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAACAGTTCTTGTCTGGCCTACC 228 361 179 Antisense
CACCGTTGCCGATGACTCATGATGA 561 201 203 Antisense
TAATCCATGTACTGACCACCGAATC 264 635 230 Antisense
ACAACAACGATCAAGCCAACAGCCA 5 113 259 Antisense
GCCACCAGTGCCTGACCAAATGGCT 225 279 300 Antisense
AGCTCCTCCAGTGCCAGAAGAAAAC 229 81 342 Antisense
GGAAAAGGAACTTGGCTCGCGGAGC 511 523 428 Antisense
ACGCATATGTTGCTCAATTCCATCA 28 93 494 Antisense
AGAGTGGCTCGTCAACACACTACTC 355 63 541 Antisense
TTCACATATCCACCACTGGTCTTCA 50 687 574 Antisense
TTACCGCTCACTACCAGAGGGCAAA 148 683 732 Antisense
Sequence Source Affymetrix Proprietary Database