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[179238_at]

Description C46C2.3 /REP_DB=WormBase Gene ID /WP=CE03082 /TR=Q18658 /GB=CAA92592.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 61      4grp_total > 27      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 56.2
(2.7)
A 		57.4
(3)
A 		38.4
(-1.4)
A 		31.4
(-3)
A 		26
B 42.2
(-0)
A 		29.7
(-3)
A 		36
(-1.5)
A 		55
(3)
A 		25
C 28.1
(-3)
A 		60.9
(0.8)
A 		42
(-1.4)
A 		79.4
(3)
P 		51
avr 42.2
(-1.8) 		49.3
(0.8) 		38.8
(-3) 		55.3
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 55.6
(2)
A 		39.3
(0.3)
P 		65.2
(3)
A 		35.6
(-0.1)
A 		21
(-1.7)
A 		8.3
(-3)
A 		57
B 37
(-2.3)
A 		45.7
(-1.4)
A 		60.2
(0.2)
A 		86.5
(3)
A 		30.9
(-3)
A 		34.9
(-2.6)
A 		56
C 33.1
(-0.6)
A 		15.7
(-3)
A 		56.6
(2.6)
A 		50.8
(1.8)
A 		59.2
(3)
P 		38.8
(0.2)
A 		44
avr 41.9
(-0.4) 		33.6
(-1.9) 		60.7
(3) 		57.6
(2.4) 		37
(-1.3) 		27.3
(-3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 20.5
(3)
A 		12.5
(-0)
A 		10
(-1)
A 		4.6
(-3)
A 		16
B 13.5
(3)
A 		7.3
(-3)
A 		8.3
(-2)
A 		11.7
(1.3)
A 		6
C 9.3
(-3)
A 		17.5
(3)
A 		14.7
(1)
A 		13.4
(0)
P 		8
avr 14.4
(3) 		12.4
(0.3) 		11
(-1.5) 		9.9
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 10.2
(1)
A 		14
(2.9)
P 		14.2
(3)
A 		9
(0.4)
A 		6.3
(-0.9)
A 		2
(-3)
A 		12
B 12.9
(-2.8)
A 		15.2
(-1.5)
A 		14.6
(-1.8)
A 		22.9
(3)
A 		12.6
(-3)
A 		13
(-2.8)
A 		10
C 12.3
(0.1)
A 		4.8
(-3)
A 		14.4
(1)
A 		10.2
(-0.8)
A 		19.2
(3)
P 		13
(0.4)
A 		14
avr 11.8
(-0.1) 		11.3
(-0.6) 		14.4
(3) 		14
(2.5) 		12.7
(1) 		9.3
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179238_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8465
Sequence Type Exemplar sequence
Representative Public ID C46C2.3 NCBI
Target Description C46C2.3 /REP_DB=WormBase Gene ID /WP=CE03082 /TR=Q18658 /GB=CAA92592.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069204(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069204 NCBI Caenorhabditis elegans C46C2.3 (C46C2.3) mRNA, complete cds. 11/11 None
SNAP00000024425 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9226189:9227607:1 9/11 None
GENEFINDER00000024427 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9223453:9227759:1 11/11 None
C46C2.3 ENSEMBL cdna:known chromosome:CEL140:IV:9225693:9227759:1 gene:C46C2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9225698-9227765(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C46C2.3
Entrez Gene 183502 Entrez gene
SwissProt Q18658 EMBL-EBI
WormBase CE03082 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92592 Hypothetical protein C46C2.3 [Caenorhabditis elegans] ref|NP_501605.1| C46C2.3 [Caenorhabditis elegans] 1.0E-170
blast CAA92592 Hypothetical protein C46C2.3 [Caenorhabditis elegans] ref|NP_501605.1| C46C2.3 [Caenorhabditis elegans] 1.0E-169
blast CAA92592 Hypothetical protein C46C2.3 [Caenorhabditis elegans] ref|NP_501605.1| C46C2.3 [Caenorhabditis elegans] 1.0E-119
Sequence
Target Sequence 
>C. ELEGANS:179238_AT
tgggacagttgcacagcattgcctcgcccacaattgtcaaatgaagtactggcatctcac
tggcggtcctatatcaagacacttgatgttgccgcgaggcttgaagagtatggaaaagct
cttgcatattttcctcatcctatgctgctcgtggatgccgtgaaacttgagaatgatcct
tcagtgaaacttgaaacgttgaaaagagacctgttcatgcctgaaatgagaggcaagttt
acactgatcaaggaaatccgcaaatggacaaacaacgccccaacaatccgtgacatactt
caaggcgcaaaaaatcaatttccgaacgacgaagacatctgtcgtgccagcacaatatac
gaagagcacttaaaaaatgcagatggtgctcatcaagctgtgaaaacgtttatggttgta
aatccgacgtacactggaaaaaatcttattgaattggccgctagactgtattcggatggg
tcaagaagtggatattcggatccactggatcaagcgaaaggaactcatccaattactcaa
ggaaacgtgcacattcttcttcgaacaatccaacaccgagtcatcagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGGACAGTTGCACAGCATTGCCTC 174 555 289 Antisense
GCCTCGCCCACAATTGTCAAATGAA 200 283 309 Antisense
ATGAAGTACTGGCATCTCACTGGCG 202 45 329 Antisense
TCTCACTGGCGGTCCTATATCAAGA 318 611 343 Antisense
ACACTTGATGTTGCCGCGAGGCTTG 121 111 367 Antisense
AAAAGCTCTTGCATATTTTCCTCAT 85 133 402 Antisense
CTGCTCGTGGATGCCGTGAAACTTG 516 237 433 Antisense
AATCCGTGACATACTTCAAGGCGCA 482 167 573 Antisense
GACGAAGACATCTGTCGTGCCAGCA 437 377 616 Antisense
AGGAAACGTGCACATTCTTCTTCGA 463 55 828 Antisense
AACAATCCAACACCGAGTCATCAGT 272 135 852 Antisense
Sequence Source Affymetrix Proprietary Database