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[179236_at]

Description Y6B3B.6 /REP_DB=WormBase Gene ID /WP=CE20180 /TR=Q9U1T3 /GB=CAB63411.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 35      4grp_total > 30      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 162
1 2 3 4 range
A 262.1
(3)
A 		136.8
(-3)
A 		160.9
(-1.8)
A 		164.5
(-1.7)
A 		125
B 182.2
(1.8)
A 		183.6
(1.9)
A 		100.6
(-3)
A 		201.7
(3)
A 		101
C 201
(2.5)
A 		179.1
(-3)
A 		202.8
(3)
A 		200.6
(2.4)
A 		24
avr 215.1
(3) 		166.5
(-1.8) 		154.8
(-3) 		188.9
(0.4) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 157
1 2 3 4 5 6 range
A 97.2
(-2.3)
A 		176.4
(3)
A 		124.7
(-0.5)
A 		86.5
(-3)
A 		103.8
(-1.8)
A 		169.5
(2.5)
A 		90
B 177.7
(3)
A 		155.9
(1.3)
A 		108.1
(-2.4)
A 		123.4
(-1.2)
A 		124.4
(-1.1)
A 		100.1
(-3)
A 		78
C 231
(3)
A 		173.8
(0.8)
A 		175.1
(0.9)
A 		74.5
(-3)
A 		140.3
(-0.5)
A 		117.3
(-1.4)
A 		157
avr 168.6
(3) 		168.7
(3) 		136
(0.3) 		94.8
(-3) 		122.8
(-0.7) 		129
(-0.2) 		74
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 95.4
(3)
A 		29.7
(-2.5)
A 		42.1
(-1.5)
A 		24.1
(-3)
A 		71
B 58.1
(3)
A 		45.4
(0.8)
A 		23.3
(-3)
A 		43
(0.4)
A 		35
C 66.5
(2.3)
A 		51.5
(-0.1)
A 		70.7
(3)
A 		33.8
(-3)
A 		37
avr 73.3
(3) 		42.2
(-1.7) 		45.4
(-1.2) 		33.6
(-3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 17.9
(-3)
A 		62.7
(3)
A 		27.2
(-1.8)
A 		21.9
(-2.5)
A 		31.3
(-1.2)
A 		41.3
(0.1)
A 		45
B 61.8
(3)
A 		51.9
(1.3)
A 		26.2
(-3)
A 		32.7
(-1.9)
A 		50.5
(1.1)
A 		37.3
(-1.1)
A 		36
C 85.6
(3)
A 		53
(0.2)
A 		44.6
(-0.5)
A 		15
(-3)
A 		45.4
(-0.4)
A 		39.3
(-0.9)
A 		71
avr 55.1
(2.9) 		55.9
(3) 		32.7
(-1.3) 		23.2
(-3) 		42.4
(0.5) 		39.3
(-0) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179236_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1499
Sequence Type Exemplar sequence
Representative Public ID Y6B3B.6 NCBI
Target Description Y6B3B.6 /REP_DB=WormBase Gene ID /WP=CE20180 /TR=Q9U1T3 /GB=CAB63411.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061003(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061003 NCBI Caenorhabditis elegans Y6B3B.9 (Y6B3B.9) mRNA, complete cds. 11/11 None
GENEFINDER00000043755 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13758053:13764251:-1 11/11 None
Y6B3B.9 ENSEMBL cdna:known chromosome:CEL140:I:13743087:13759242:-1 gene:Y6B3B.9 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000043753 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13758391-13759173(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y6B3B.9
Entrez Gene 173239 Entrez gene
SwissProt Q9U1T1 EMBL-EBI
WormBase CE34133 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB63413 Hypothetical protein Y6B3B.9 [Caenorhabditis elegans] ref|NP_493404.2| Y6B3B.9 [Caenorhabditis elegans] 0.0
blast CAA21725 Hypothetical protein Y6B3B.5a [Caenorhabditis elegans] ref|NP_001021801.1| Y6B3B.5a [Caenorhabditis elegans] 1.0E-155
blast CAH60799 Hypothetical protein Y6B3B.5b [Caenorhabditis elegans] ref|NP_001021802.1| Y6B3B.5b [Caenorhabditis elegans] 1.0E-155
blast CAE68023 Hypothetical protein CBG13639 [Caenorhabditis briggsae] 1.0E-100
blast CAE68021 Hypothetical protein CBG13636 [Caenorhabditis briggsae] 1.0E-80
blast NP_112483 LAS1-like [Homo sapiens] emb|CAI42835.1| novel protein [Homo sapiens] dbj|BAB14114.1| unnamed protein product [Homo sapiens] gb|AAO15306.1| MSTP060 [Homo sapiens] sp|Q9Y4W2|LAS1L_HUMAN LAS1-like protein gb|AAH14545.1| LAS1-like [Homo sapiens] 2.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR007174 EMBL-EBI Las1-like 4.6E-13
Pfam IPR000760 EMBL-EBI Inositol monophosphatase 2.0E-14
Pfam IPR000760 EMBL-EBI Inositol monophosphatase 5.7E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000043755 2 9-28,464-486
Sequence
Target Sequence 
>C. ELEGANS:179236_AT
gttaattgtgtcctttactccatacgaatggaaatacgttcgccagttattccgtagccg
tcggattgaagacgtcaaggagtgcgtcattattcttgccacgtggatttccagaaccgg
cgagaacactccggtggcgatttcgtgtagtcacgtgttacttcaagcgatctacgcgga
acttttatcgacaggaatgtgcgaatcggaacgatacatggcaatcgacgatctccgctc
gaagcacggatac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTAATTGTGTCCTTTACTCCATAC 690 445 36 Antisense
GAAATACGTTCGCCAGTTATTCCGT 528 363 66 Antisense
GTTATTCCGTAGCCGTCGGATTGAA 51 447 81 Antisense
GAGTGCGTCATTATTCTTGCCACGT 476 395 115 Antisense
GCCACGTGGATTTCCAGAACCGGCG 279 279 133 Antisense
GAACCGGCGAGAACACTCCGGTGGC 86 347 149 Antisense
ACTCCGGTGGCGATTTCGTGTAGTC 189 99 163 Antisense
GTCACGTGTTACTTCAAGCGATCTA 92 465 185 Antisense
GATCTACGCGGAACTTTTATCGACA 612 419 204 Antisense
TACATGGCAATCGACGATCTCCGCT 589 643 250 Antisense
CGATCTCCGCTCGAAGCACGGATAC 158 249 264 Antisense
Sequence Source Affymetrix Proprietary Database