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[179233_at]

Description F20D1.1 /REP_DB=WormBase Gene ID /WP=CE09494 /TR=Q93533 /GB=CAB01743.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 08      4grp_highest_8_8 > 24      4grp_high_8_8 > 44      6grp_highest_nonorm > 30      6grp_total > 19      4grp_total > 52      6grp_highest_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 425
1 2 3 4 range
A 783.9
(0)
P 		951
(3)
P 		721
(-1.1)
P 		615.7
(-3)
P 		335
B 706.6
(-0.4)
P 		684.9
(-2.9)
P 		734.7
(3)
P 		684.4
(-3)
P 		50
C 793.4
(3)
P 		794.3
(3)
P 		765
(2.3)
P 		526.4
(-3)
P 		268
avr 761.3
(1.5) 		810.1
(3) 		740.2
(0.9) 		608.8
(-3) 		201

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 727
1 2 3 4 5 6 range
A 1236.8
(3)
P 		684.8
(-3)
P 		692.9
(-2.9)
P 		732.3
(-2.5)
P 		810.3
(-1.6)
P 		740.2
(-2.4)
P 		552
B 1005.8
(3)
P 		840.9
(0.5)
P 		616.4
(-3)
P 		870.1
(0.9)
P 		830.3
(0.3)
P 		827
(0.2)
P 		389
C 1220
(3)
P 		743.6
(-1)
P 		660.6
(-1.7)
P 		805.8
(-0.5)
P 		772.1
(-0.8)
P 		510.3
(-3)
P 		710
avr 1154.2
(3) 		756.4
(-1.8) 		656.6
(-3) 		802.7
(-1.2) 		804.2
(-1.2) 		692.5
(-2.6) 		498
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 197
1 2 3 4 range
A 285.4
(3)
P 		206.4
(0.6)
P 		188.5
(0)
P 		90.1
(-3)
P 		195
B 225.3
(3)
P 		169.2
(-1.2)
P 		170.3
(-1.2)
P 		145.9
(-3)
P 		79
C 262.6
(2.9)
P 		228.4
(1.7)
P 		266.6
(3)
P 		88.8
(-3)
P 		178
avr 257.8
(3) 		201.3
(0.7) 		208.5
(1) 		108.3
(-3) 		150

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 303
1 2 3 4 5 6 range
A 228
(1.9)
P 		243.5
(2.9)
P 		150.9
(-3)
P 		185.7
(-0.8)
P 		244.5
(3)
P 		180.2
(-1.1)
P 		94
B 350
(3)
P 		279.9
(0.9)
P 		149.7
(-3)
P 		230.5
(-0.6)
P 		337.3
(2.6)
P 		308.4
(1.8)
P 		200
C 452.2
(3)
P 		226.9
(-1.7)
P 		168.1
(-2.9)
P 		162.1
(-3)
P 		249.8
(-1.2)
P 		170.8
(-2.8)
P 		290
avr 343.4
(3) 		250.1
(0) 		156.2
(-3) 		192.8
(-1.8) 		277.2
(0.9) 		219.8
(-1) 		187
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179233_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18042
Sequence Type Exemplar sequence
Representative Public ID F20D1.1 NCBI
Target Description F20D1.1 /REP_DB=WormBase Gene ID /WP=CE09494 /TR=Q93533 /GB=CAB01743.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078083(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078083 NCBI Caenorhabditis elegans F20D1.1 (F20D1.1) mRNA, complete cds. 11/11 None
GENEFINDER00000040742 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14969195:14970168:-1 11/11 None
F20D1.1 ENSEMBL cdna:known chromosome:CEL140:X:14968839:14970189:-1 gene:F20D1.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000040726 4/11 Cross Hyb Matching Probes None
SNAP00000040727 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14969194-14970168(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F20D1.1
Entrez Gene 181591 Entrez gene
SwissProt Q93533 EMBL-EBI
WormBase CE09494 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1628390_AT dm
DROSOPHILA_2:1637061_AT dm
DROSOPHILA_2:1637808_A_AT dm
DROSGENOME1:148825_AT dm
Protein Similarities
Method ID Description E-Value
blast CAB01743 Hypothetical protein F20D1.1 [Caenorhabditis elegans] ref|NP_510484.1| F20D1.1 [Caenorhabditis elegans] 4.0E-81
blast CAE63277 Hypothetical protein CBG07654 [Caenorhabditis briggsae] 3.0E-80
blast XP_623881 PREDICTED: similar to ENSANGP00000015974 [Apis mellifera] 4.0E-21
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510484.1 3 32-54,97-116,121-140
F20D1.1 3 32-54,97-116,121-140
GENEFINDER00000040742 3 32-54,97-116,121-140
Sequence
Target Sequence 
>C. ELEGANS:179233_AT
ctgccgcgtctggagttagcacgcaaatgcaagcggaacacgatccgaatgccgcgtttc
catggtgggttcgcttcctggcaaaaggagtcgccatcctcggaggtttcctctccctat
tcttcggagtcctcggcctgatcactctctcggcgacatgcatggtggccattcttcttc
aaatgacagctggagcattagtcattgcgctggaggccccattctgctgccaattcgtcg
acttcatcgagaagattgcccgtttcagcgaatcgcgtgctctctggcacaaggctgcta
tctacggagccatgggactcattccaatcttcctgtgcatcgagctcaacactatccttg
gtagtggaaccatcttcgcctcgggtgttatttacggattcatggcgttgggcaaaaagg
cggaccgcagtaatatgatggccgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGCCGCGTCTGGAGTTAGCACGCA 640 235 20 Antisense
TCTCTCGGCGACATGCATGGTGGCC 33 613 165 Antisense
CATGGTGGCCATTCTTCTTCAAATG 460 209 180 Antisense
GCATTAGTCATTGCGCTGGAGGCCC 97 307 214 Antisense
TCGAGAAGATTGCCCGTTTCAGCGA 38 603 266 Antisense
GGCACAAGGCTGCTATCTACGGAGC 339 535 305 Antisense
GAGCCATGGGACTCATTCCAATCTT 695 383 326 Antisense
TCGAGCTCAACACTATCCTTGGTAG 226 601 359 Antisense
TTGGTAGTGGAACCATCTTCGCCTC 87 709 377 Antisense
TCTTCGCCTCGGGTGTTATTTACGG 50 615 392 Antisense
GGACCGCAGTAATATGATGGCCGCT 94 523 441 Antisense
Sequence Source Affymetrix Proprietary Database