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[179232_at]

Description R07H5.3 /REP_DB=WormBase Gene ID /WP=CE12554 /TR=Q93931 /GB=CAB03226.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 46      6grp_high1_10_10 > 73      4grp_highest_8_8 > 36      4grp_high_8_8 > 0      6grp_highest_nonorm > 74      6grp_total > 70      4grp_total > 07      6grp_high1_sub > 03_04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 229
1 2 3 4 range
A 743.1
(1.9)
P 		641.6
(-3)
P 		650.8
(-2.6)
P 		766.6
(3)
P 		125
B 752.2
(-0.6)
P 		670.6
(-3)
P 		870.6
(3)
P 		720.1
(-1.5)
P 		200
C 837.3
(3)
P 		691.3
(-3)
P 		726.2
(-1.6)
P 		713.8
(-2.1)
P 		146
avr 777.5
(3) 		667.8
(-3) 		749.2
(1.5) 		733.5
(0.6) 		110

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 373
1 2 3 4 5 6 range
A 679.6
(-1.4)
P 		719.9
(-0.6)
P 		763.7
(0.3)
P 		896.2
(3)
P 		602.6
(-3)
P 		727.8
(-0.4)
P 		294
B 683
(-1.4)
P 		655.1
(-2.1)
P 		792
(1.2)
P 		866.6
(3)
P 		617
(-3)
P 		763.5
(0.5)
P 		250
C 683.2
(0.4)
P 		739.3
(1.6)
P 		803.9
(3)
P 		799.7
(2.9)
P 		523
(-3)
P 		803.3
(3)
P 		281
avr 681.9
(-0.8) 		704.8
(-0.3) 		786.5
(1.5) 		854.2
(3) 		580.9
(-3) 		764.9
(1) 		273
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 165
1 2 3 4 range
A 270.6
(3)
P 		139.3
(-2)
P 		170.1
(-0.8)
P 		112.2
(-3)
P 		158
B 239.9
(3)
P 		165.6
(-2.2)
P 		201.7
(0.3)
P 		153.5
(-3)
P 		86
C 277.2
(3)
P 		198.7
(-0)
P 		253.1
(2.1)
P 		120.4
(-3)
P 		157
avr 262.6
(3) 		167.9
(-1.2) 		208.3
(0.6) 		128.7
(-3) 		134

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 159
1 2 3 4 5 6 range
A 125.3
(-3)
P 		256
(3)
P 		166.3
(-1.1)
P 		227.3
(1.7)
P 		181.8
(-0.4)
P 		177.2
(-0.6)
P 		131
B 237.6
(-0.1)
P 		218.1
(-1.3)
P 		192.3
(-3)
P 		229.5
(-0.6)
P 		250.7
(0.8)
P 		284.7
(3)
P 		92
C 253.2
(2.1)
P 		225.6
(0.6)
P 		204.6
(-0.6)
P 		160.8
(-3)
P 		169.2
(-2.5)
P 		268.9
(3)
P 		108
avr 205.4
(-1.1) 		233.2
(1.9) 		187.7
(-3) 		205.9
(-1) 		200.6
(-1.6) 		243.6
(3) 		56
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179232_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8843
Sequence Type Exemplar sequence
Representative Public ID R07H5.3 NCBI
Target Description R07H5.3 /REP_DB=WormBase Gene ID /WP=CE12554 /TR=Q93931 /GB=CAB03226.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028158(11), NM_001028157(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028158 NCBI Caenorhabditis elegans R07H5.3b (R07H5.3) mRNA, complete cds. 11/11 None
NM_001028157 NCBI Caenorhabditis elegans R07H5.3a (R07H5.3) mRNA, complete cds. 11/11 None
SNAP00000030259 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11184268:11185895:1 11/11 None
GENEFINDER00000030273 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11185037:11185895:1 10/11 None
R07H5.3b ENSEMBL cdna:known chromosome:CEL140:IV:11184193:11185946:1 gene:R07H5.3 11/11 None
R07H5.3a ENSEMBL cdna:known chromosome:CEL140:IV:11184263:11185895:1 gene:R07H5.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11184198-11185901(+) 100.0 100.0
Public Domain and Genome References
Ensembl R07H5.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE45743 Hypothetical protein R07H5.3b [Caenorhabditis elegans] ref|NP_001023329.1| R07H5.3b [Caenorhabditis elegans] 1.0E-167
blast CAB03226 Hypothetical protein R07H5.3a [Caenorhabditis elegans] ref|NP_001023328.1| R07H5.3a [Caenorhabditis elegans] 1.0E-151
blast CAE45743 Hypothetical protein R07H5.3b [Caenorhabditis elegans] ref|NP_001023329.1| R07H5.3b [Caenorhabditis elegans] 1.0E-151
Protein Domains
Database ID Description E-Value
Pfam IPR006729 EMBL-EBI Protein of unknown function DUF598 8.0E-69
Pfam IPR006729 EMBL-EBI Protein of unknown function DUF598 8.0E-69
Pfam IPR006729 EMBL-EBI Protein of unknown function DUF598 3.5E-36
Pfam IPR006729 EMBL-EBI Protein of unknown function DUF598 9.9E-25
Sequence
Target Sequence 
>C. ELEGANS:179232_AT
ggagttcgtggactttcatgctatggatttcgacttctcgatggaacatttttatatggc
ccaatcgccttgtttccaaagacggctctttcgtggcgtgttccaactccagaagacatc
actccacgatcacttgctctttttgctgctcttgaaccaaaaattgacattcttgtgtta
ggagttggggataaaaagaatattgacaaagttcgagccagtgtagcaccattccttcgt
gaacataaaattggattagagattatggatactgaggacgcgatcgcaacattcaatttt
ctgaatgccgaggggcgatatgtaggagctgctctttatcctccagatgatatggttgtt
actgataaggaatacggtagagctctggctcttttgaaaggatgggacacggttgaagaa
aatccattgctcactggtctttctgatacaataaacggggctgaggatttggttaagcga
ttgtggagtggagatgaaaagagttggcaatcagcaagacaaaaagtacttgagtcacca
tctgaacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGTTCGTGGACTTTCATGCTATG 116 519 298 Antisense
CATGCTATGGATTTCGACTTCTCGA 331 211 314 Antisense
TTATATGGCCCAATCGCCTTGTTTC 53 681 349 Antisense
TCCAAAGACGGCTCTTTCGTGGCGT 632 587 372 Antisense
AAAGTTCGAGCCAGTGTAGCACCAT 127 121 505 Antisense
GTAGCACCATTCCTTCGTGAACATA 77 457 520 Antisense
GACGCGATCGCAACATTCAATTTTC 199 381 574 Antisense
GGGCGATATGTAGGAGCTGCTCTTT 148 493 610 Antisense
CTGCTCTTTATCCTCCAGATGATAT 615 237 626 Antisense
GCTCACTGGTCTTTCTGATACAATA 552 301 726 Antisense
AGTACTTGAGTCACCATCTGAACGA 476 61 822 Antisense
Sequence Source Affymetrix Proprietary Database