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[179231_at]

Description C47G2.5 /REP_DB=WormBase Gene ID /WP=CE02168 /TR=Q18696 /GB=CAA88937.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 36      4grp_total > 14      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 171.7
(3)
P 		147.7
(0.9)
A 		102.9
(-3)
A 		163.1
(2.3)
A 		69
B 189.8
(3)
P 		124.5
(-3)
A 		140.4
(-1.5)
A 		164.1
(0.6)
A 		65
C 135.1
(-3)
P 		144.9
(-2.1)
A 		167.9
(0.1)
A 		199.1
(3)
M 		64
avr 165.5
(1.4) 		139
(-2.7) 		137.1
(-3) 		175.4
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 169
1 2 3 4 5 6 range
A 165.7
(0.2)
A 		144.4
(-0.7)
P 		95.4
(-3)
A 		138.8
(-1)
A 		151.1
(-0.4)
M 		225.2
(3)
P 		130
B 143.9
(1.7)
M 		169.4
(3)
M 		128.3
(0.8)
A 		55.9
(-3)
P 		91.3
(-1.1)
A 		142
(1.6)
P 		114
C 162.7
(2.6)
P 		144.5
(1.3)
A 		169
(3)
A 		109.7
(-1.2)
A 		91.2
(-2.4)
A 		83.3
(-3)
A 		86
avr 157.4
(3) 		152.8
(2.5) 		130.9
(0.2) 		101.5
(-3) 		111.2
(-2) 		150.2
(2.2) 		56
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 62.5
(3)
P 		32.1
(-1.7)
A 		26.9
(-2.5)
A 		23.9
(-3)
A 		39
B 60.5
(3)
P 		30.7
(-3)
A 		32.5
(-2.6)
A 		35
(-2.1)
A 		30
C 44.7
(-0.3)
P 		41.6
(-1.1)
A 		58.5
(3)
A 		33.6
(-3)
M 		25
avr 55.9
(3) 		34.8
(-2) 		39.3
(-1) 		30.8
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 30.5
(-1.3)
A 		51.4
(2.4)
P 		20.8
(-3)
A 		35.2
(-0.5)
A 		45.6
(1.4)
M 		54.8
(3)
P 		34
B 50.1
(2.1)
M 		56.4
(3)
M 		31.2
(-0.6)
A 		14.8
(-3)
P 		37.1
(0.2)
A 		52.9
(2.5)
P 		42
C 60.3
(3)
P 		44.1
(0.5)
A 		43
(0.3)
A 		22.1
(-3)
A 		29.5
(-1.8)
A 		27.9
(-2.1)
A 		38
avr 47
(2.2) 		50.6
(3) 		31.7
(-1.3) 		24
(-3) 		37.4
(0) 		45.2
(1.8) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179231_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3477
Sequence Type Exemplar sequence
Representative Public ID C47G2.5 NCBI
Target Description C47G2.5 /REP_DB=WormBase Gene ID /WP=CE02168 /TR=Q18696 /GB=CAA88937.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064013(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064013 NCBI Caenorhabditis elegans C47G2.5 (C47G2.5) mRNA, complete cds. 11/11 None
SNAP00000012600 ENSEMBL cdna:SNAP chromosome:CEL140:II:11297606:11300517:1 11/11 None
GENEFINDER00000012601 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11297606:11300517:1 11/11 None
C47G2.5 ENSEMBL cdna:known chromosome:CEL140:II:11296544:11301170:1 gene:C47G2.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11296540-11300514(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C47G2.5
Entrez Gene 174725 Entrez gene
SwissProt Q18696 EMBL-EBI
WormBase CE38162 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88937 Hypothetical protein C47G2.5 [Caenorhabditis elegans] ref|NP_496414.2| C47G2.5 [Caenorhabditis elegans] 0.0
blast CAE59538 Hypothetical protein CBG02933 [Caenorhabditis briggsae] 0.0
blast AAH73386 MGC80827 protein [Xenopus laevis] 2.0E-15
Protein Domains
Database ID Description E-Value
Pfam IPR007587 EMBL-EBI SIT4 phosphatase-associated protein 1.0E-126
Pfam IPR007587 EMBL-EBI SIT4 phosphatase-associated protein 1.0E-126
Pfam IPR007587 EMBL-EBI SIT4 phosphatase-associated protein 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:179231_AT
aatatgcagcgattttccgactttgaaggtcaatttgacgacacgccggacgaggatgag
ttcagaaagttgtgctcagagcgagccaactcctcgtcgtgcgctggaataagtttcgag
acgagcccaatcaaatggcctggagaggcagaaaagacatcagagaaggcgtcggaacca
ccgagtgtcgttgccagtacgtatccacaacagacaaacgggaatcaggcttttctagaa
caggaagaaggagacggggagtgggtgtggccaactgtgccaccactcggggaaaccgaa
gttgtcactcagactggacatcgtccggaaaataactgggttgacgagacggcacctgac
ttttcacatttagacatggcacccccaaaggaagacgatatgtgggccgatttctcctcg
ttcccaaccatcagtccgactgcagctgcaaactcggcgtcgtccagtagctccgatgcg
tggcctggatcagacattcatcttcaaggggaagcgtcggattggccgttgaacaactcg
cacgaatcgaaagcatccgacccggtaatggtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATATGCAGCGATTTTCCGACTTTG 78 173 2179 Antisense
GACGACACGCCGGACGAGGATGAGT 129 377 2215 Antisense
GTCGGAACCACCGAGTGTCGTTGCC 267 471 2349 Antisense
AGTGTCGTTGCCAGTACGTATCCAC 628 49 2362 Antisense
GGGAGTGGGTGTGGCCAACTGTGCC 369 495 2435 Antisense
TTCACATTTAGACATGGCACCCCCA 620 685 2541 Antisense
GACGATATGTGGGCCGATTTCTCCT 248 377 2572 Antisense
GTCCGACTGCAGCTGCAAACTCGGC 375 475 2612 Antisense
GATGCGTGGCCTGGATCAGACATTC 127 415 2653 Antisense
GGAAGCGTCGGATTGGCCGTTGAAC 703 529 2688 Antisense
GAAAGCATCCGACCCGGTAATGGTT 66 331 2727 Antisense
Sequence Source Affymetrix Proprietary Database