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[179230_at]

Description C47E8.3 /REP_DB=WormBase Gene ID /WP=CE05439 /TR=Q18687 /GB=CAA99792.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 09      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 81      6grp_total > 02      4grp_total > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 825
1 2 3 4 range
A 409.3
(-0.6)
P 		159.3
(-3)
P 		189.9
(-2.7)
P 		796.2
(3)
P 		637
B 450.8
(-0.3)
P 		210
(-2.4)
P 		145
(-3)
P 		819.9
(3)
P 		675
C 342.7
(-1.4)
P 		173.8
(-2.6)
P 		124.1
(-3)
P 		949.2
(3)
P 		825
avr 400.9
(-0.9) 		181
(-2.8) 		153
(-3) 		855.1
(3) 		702

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 175
1 2 3 4 5 6 range
A 341
(3)
P 		254.7
(-0.9)
P 		255.6
(-0.9)
P 		265.4
(-0.5)
P 		298.3
(1)
P 		209.7
(-3)
P 		131
B 281.7
(-1.3)
P 		369.3
(3)
P 		245.8
(-3)
P 		278
(-1.4)
P 		345.4
(1.8)
P 		265.1
(-2.1)
P 		124
C 252.3
(-0.7)
P 		328.6
(2.3)
P 		194.7
(-3)
P 		345.4
(3)
P 		252.4
(-0.7)
P 		249.7
(-0.8)
P 		151
avr 291.7
(1.2) 		317.5
(3) 		232
(-3) 		296.3
(1.5) 		298.7
(1.7) 		241.5
(-2.3) 		86
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 141
1 2 3 4 range
A 149
(3)
P 		34.6
(-3)
P 		49.6
(-2.2)
P 		116.6
(1.3)
P 		114
B 143.8
(1.7)
P 		51.9
(-2.2)
P 		33.6
(-3)
P 		174.7
(3)
P 		141
C 113.4
(0.6)
P 		50
(-2.7)
P 		43.3
(-3)
P 		160
(3)
P 		117
avr 135.4
(2.2) 		45.5
(-2.8) 		42.2
(-3) 		150.4
(3) 		108

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 62.9
(-1.2)
P 		90.6
(3)
P 		55.7
(-2.3)
P 		67.3
(-0.5)
P 		90
(2.9)
P 		51
(-3)
P 		40
B 98
(-0.1)
P 		122.9
(1.7)
P 		59.7
(-3)
P 		73.6
(-2)
P 		140.3
(3)
P 		98.9
(-0.1)
P 		81
C 93.5
(2.2)
P 		100.3
(3)
P 		49.5
(-3)
P 		69.5
(-0.6)
P 		81.7
(0.8)
P 		83.6
(1)
P 		51
avr 84.8
(0.6) 		104.6
(3) 		55
(-3) 		70.1
(-1.2) 		104
(2.9) 		77.8
(-0.2) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179230_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14059
Sequence Type Exemplar sequence
Representative Public ID C47E8.3 NCBI
Target Description C47E8.3 /REP_DB=WormBase Gene ID /WP=CE05439 /TR=Q18687 /GB=CAA99792.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074223(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074223 NCBI Caenorhabditis elegans C47E8.3 (C47E8.3) mRNA, complete cds. 11/11 None
SNAP00000005833 ENSEMBL cdna:SNAP chromosome:CEL140:V:14685117:14686226:1 11/11 None
GENEFINDER00000005845 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14682910:14686226:1 11/11 None
C47E8.3 ENSEMBL cdna:known chromosome:CEL140:V:14685117:14686226:1 gene:C47E8.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14685116-14686226(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C47E8.3
Entrez Gene 183552 Entrez gene
SwissProt Q18687 EMBL-EBI
WormBase CE05439 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99792 Hypothetical protein C47E8.3 [Caenorhabditis elegans] ref|NP_506624.1| C47E8.3 [Caenorhabditis elegans] 1.0E-166
blast CAE60853 Hypothetical protein CBG04562 [Caenorhabditis briggsae] 1.0E-147
blast CAE75249 Hypothetical protein CBG23207 [Caenorhabditis briggsae] 2.0E-34
blast CAE75249 Hypothetical protein CBG23207 [Caenorhabditis briggsae] 4.0E-27
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506624.1 5 15-37,64-83,127-144,179-201,216-238
C47E8.3 5 15-37,64-83,127-144,179-201,216-238
SNAP00000005833 5 15-37,64-83,127-144,179-201,216-238
GENEFINDER00000005845 7 26-48,99-121,141-163,189-208,252-269,304-326,341-363
Sequence
Target Sequence 
>C. ELEGANS:179230_AT
ttccgttccttgtacttctaactatgaacattatgatcgtgaaagcagtgaaagaagatg
agaggcagaaattgcaaaaagaatcggttgtcagcaatgggaagtcggtgaatgtgaaat
cgcatcgaagaaatgtgaaggatgcgacaagggcattaatcagtctcgtctccatttatc
ttttgtcgcaatctcttcaggtttttctaacagtatgggagaccatcaatcgttcgagcc
tcgaggatggatttccaactatgtactcttatctaaatgatatagtttcaatctttaccc
ttttggcaagttgtcttcgcttcccgatatatttctgctgcaatcggctaatccacacgg
cttccgttgatactctccatggaatgcgaatcacttgtttaatgggcaattcgaaaaagc
cacaggaatactctccgatccatggtattccgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCGTTCCTTGTACTTCTAACTAT 164 691 395 Antisense
AAGGGCATTAATCAGTCTCGTCTCC 650 159 543 Antisense
CTCGTCTCCATTTATCTTTTGTCGC 131 233 559 Antisense
GTCGCAATCTCTTCAGGTTTTTCTA 295 475 579 Antisense
ATGGGAGACCATCAATCGTTCGAGC 450 49 609 Antisense
ACCCTTTTGGCAAGTTGTCTTCGCT 100 77 691 Antisense
TCGCTTCCCGATATATTTCTGCTGC 140 599 711 Antisense
TTTCTGCTGCAATCGGCTAATCCAC 149 671 726 Antisense
ATCCACACGGCTTCCGTTGATACTC 391 39 745 Antisense
AAGCCACAGGAATACTCTCCGATCC 361 147 811 Antisense
ACTCTCCGATCCATGGTATTCCGAA 140 101 824 Antisense
Sequence Source Affymetrix Proprietary Database