[Home] | [Total List]

[179229_at]

Description F33C8.2 /REP_DB=WormBase Gene ID /WP=CE05797 /TR=Q19982 /GB=CAA93654.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 14      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 72.6
(3)
A 		5
(-2.8)
A 		2.9
(-3)
A 		14.3
(-2)
A 		70
B 45.5
(3)
A 		4.4
(-3)
A 		5.5
(-2.8)
A 		37.5
(1.8)
A 		41
C 43.9
(-1.1)
A 		12.1
(-2.6)
A 		4.5
(-3)
A 		128.8
(3)
A 		124
avr 54
(2.3) 		7.2
(-2.7) 		4.3
(-3) 		60.2
(3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 3.2
(-2.6)
A 		1.5
(-3)
A 		20.9
(1.1)
A 		6.8
(-1.9)
A 		19.2
(0.7)
A 		30.1
(3)
A 		29
B 11.6
(-0.2)
A 		5.6
(-2.2)
A 		3.2
(-3)
A 		5
(-2.4)
A 		21.5
(3)
A 		5
(-2.4)
A 		18
C 1.9
(-3)
A 		25.6
(3)
A 		2
(-3)
A 		8.5
(-1.3)
A 		4.9
(-2.2)
A 		2.5
(-2.8)
A 		24
avr 5.6
(-3) 		10.9
(0.3) 		8.7
(-1.1) 		6.8
(-2.3) 		15.2
(3) 		12.5
(1.3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 26.4
(3)
A 		1.1
(-2.9)
A 		0.8
(-3)
A 		2.1
(-2.7)
A 		26
B 14.5
(3)
A 		1.1
(-3)
A 		1.3
(-2.9)
A 		8
(0.1)
A 		13
C 14.5
(0.9)
A 		3.5
(-2.4)
A 		1.6
(-3)
A 		21.7
(3)
A 		20
avr 18.5
(3) 		1.9
(-2.8) 		1.2
(-3) 		10.6
(0.3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.6
(-2.9)
A 		0.5
(-3)
A 		4.6
(0.6)
A 		1.7
(-1.9)
A 		5.8
(1.7)
A 		7.3
(3)
A 		7
B 4
(-0.6)
A 		1.9
(-2.2)
A 		0.8
(-3)
A 		1.3
(-2.6)
A 		8.7
(3)
A 		1.9
(-2.2)
A 		8
C 0.7
(-2.8)
A 		7.8
(3)
A 		0.5
(-3)
A 		1.7
(-2)
A 		1.6
(-2.1)
A 		0.8
(-2.8)
A 		7
avr 1.8
(-2.7) 		3.4
(-0.2) 		2
(-2.4) 		1.6
(-3) 		5.4
(3) 		3.3
(-0.3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179229_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17899
Sequence Type Exemplar sequence
Representative Public ID F33C8.2 NCBI
Target Description F33C8.2 /REP_DB=WormBase Gene ID /WP=CE05797 /TR=Q19982 /GB=CAA93654.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) F33C8.2
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F33C8.2 F33C8.2 /REP_DB=WormBase Gene ID /WP=CE05797 /TR=Q19982 /GB=CAA93654.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_078043 4/11 Cross Hyb Matching Probes None
SNAP00000025089 4/11 Cross Hyb Matching Probes None
GENEFINDER00000025097 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14721314-14723538(+) 65.71 70.0
Public Domain and Genome References
Ensembl F33C8.2
Sequence
Target Sequence 
>C. ELEGANS:179229_AT
aagttgatgccacagtttttgctttaacaccacaggaaattacagattatgtcaagaagg
ttctggaacattccagaattttctcaaattttccagaaggttctggaacattccagcatt
ttctcaaattttccagaaggttctggagcattccggaattttctcaaagtttccaatatc
cgttcaatagacgaaaagtcaatttttcccaaactacagtaatcctacagtactcctaca
gtacctctacagtacaactacagtaccccaaccatatcccgacactaaccccaaagcaat
atcacttcaaaaaacgaaaagccaatttttttcaaaaatacagtaatcctacagtactcc
tacagtattactacagtactactacagtaccccgaccatatcccaccactaacctcaaac
caatatcacttcaaaagacaaaaagtcaatttttccaaaactacagtaaccctacagtaa
ccctacagtacccctacagtactactacagtatcccgaccatatcccaccactaacccca
acccacaatcccttcaacagccggaaacaccttgcaggtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTTGATGCCACAGTTTTTGCTTT 537 155 1172 Antisense
GCCACAGTTTTTGCTTTAACACCAC 409 277 1180 Antisense
CAGTTTTTGCTTTAACACCACAGGA 237 207 1184 Antisense
AACACCACAGGAAATTACAGATTAT 242 131 1197 Antisense
GACACTAACCCCAAAGCAATATCAC 151 367 1452 Antisense
AACCCCAAAGCAATATCACTTCAAA 301 145 1458 Antisense
CTCCTACAGTATTACTACAGTACTA 256 235 1528 Antisense
CACCACTAACCTCAAACCAATATCA 394 201 1575 Antisense
ACCTCAAACCAATATCACTTCAAAA 594 83 1583 Antisense
CTTCAACAGCCGGAAACACCTTGCA 150 221 1723 Antisense
AACAGCCGGAAACACCTTGCAGGTG 30 117 1727 Antisense
Sequence Source Affymetrix Proprietary Database