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[179226_at]

Description C06B3.7 /REP_DB=WormBase Gene ID /WP=CE28430 /TR=Q17706 /GB=CAB01117.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 63      4grp_total > 23      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 199
1 2 3 4 range
A 145.6
(3)
P 		2.2
(-3)
A 		45.5
(-1.2)
A 		135.7
(2.6)
A 		143
B 181.9
(3)
P 		41.6
(-2.5)
A 		29.2
(-3)
A 		101.8
(-0.1)
P 		153
C 201.2
(3)
P 		6.7
(-3)
A 		63.1
(-1.3)
A 		153.3
(1.5)
P 		195
avr 176.2
(3) 		16.8
(-3) 		45.9
(-1.9) 		130.3
(1.3) 		159

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 291
1 2 3 4 5 6 range
A 16.7
(-3)
A 		109.8
(-1.1)
P 		307.9
(3)
P 		138.5
(-0.5)
A 		68
(-1.9)
P 		96.3
(-1.4)
A 		291
B 88.2
(-2.3)
M 		187
(1.7)
P 		219
(3)
P 		131.4
(-0.5)
P 		70.8
(-3)
P 		111.1
(-1.4)
M 		148
C 71.3
(-2.1)
A 		174.5
(3)
P 		145.2
(1.5)
P 		161.8
(2.4)
P 		53.9
(-3)
A 		133.9
(1)
A 		121
avr 58.7
(-3) 		157.1
(0.6) 		224
(3) 		143.9
(0.1) 		64.2
(-2.8) 		113.8
(-1) 		165
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 53
(3)
P 		0.5
(-3)
A 		11.9
(-1.7)
A 		19.9
(-0.8)
A 		53
B 58
(3)
P 		10.3
(-2.6)
A 		6.8
(-3)
A 		21.7
(-1.3)
P 		51
C 66.6
(3)
P 		1.9
(-3)
A 		22
(-1.1)
A 		25.8
(-0.8)
P 		65
avr 59.2
(3) 		4.2
(-3) 		13.6
(-2) 		22.5
(-1) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 3.1
(-3)
A 		39.1
(0.4)
P 		67
(3)
P 		35.1
(0)
A 		20.5
(-1.4)
P 		23.4
(-1.1)
A 		64
B 30.7
(-2.7)
M 		62.2
(3)
P 		53.2
(1.4)
P 		34.8
(-1.9)
P 		28.8
(-3)
P 		41.4
(-0.7)
M 		33
C 26.4
(-1.5)
A 		53.3
(3)
P 		37
(0.3)
P 		32.5
(-0.5)
P 		17.4
(-3)
A 		44.8
(1.6)
A 		36
avr 20.1
(-3) 		51.5
(2.8) 		52.4
(3) 		34.1
(-0.4) 		22.2
(-2.6) 		36.5
(0) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179226_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13665
Sequence Type Exemplar sequence
Representative Public ID C06B3.7 NCBI
Target Description C06B3.7 /REP_DB=WormBase Gene ID /WP=CE28430 /TR=Q17706 /GB=CAB01117.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074050(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074050 NCBI Caenorhabditis elegans C06B3.7 (C06B3.7) mRNA, complete cds. 11/11 None
SNAP00000008244 ENSEMBL cdna:SNAP chromosome:CEL140:V:13913294:13914113:1 11/11 None
GENEFINDER00000008249 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13912341:13914113:1 11/11 None
C06B3.7 ENSEMBL cdna:known chromosome:CEL140:V:13911863:13914113:1 gene:C06B3.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13912340-13914113(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C06B3.7
Entrez Gene 179886 Entrez gene
SwissProt Q17706 EMBL-EBI
WormBase CE28430 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01117 Hypothetical protein C06B3.7 [Caenorhabditis elegans] ref|NP_506451.1| C06B3.7 [Caenorhabditis elegans] 1.0E-172
blast CAB01117 Hypothetical protein C06B3.7 [Caenorhabditis elegans] ref|NP_506451.1| C06B3.7 [Caenorhabditis elegans] 1.0E-166
blast CAB01117 Hypothetical protein C06B3.7 [Caenorhabditis elegans] ref|NP_506451.1| C06B3.7 [Caenorhabditis elegans] 1.0E-131
blast CAE66198 Hypothetical protein CBG11438 [Caenorhabditis briggsae] 3.0E-84
blast CAE66198 Hypothetical protein CBG11438 [Caenorhabditis briggsae] 1.0E-82
blast CAE66198 Hypothetical protein CBG11438 [Caenorhabditis briggsae] 3.0E-61
blast CAC35886 Hypothetical protein F17C11.11 [Caenorhabditis elegans] ref|NP_505790.1| F17C11.11 [Caenorhabditis elegans] 5.0E-28
Sequence
Target Sequence 
>C. ELEGANS:179226_AT
gagtttcaatgagcacttgggaatggcaaactatcttccgatacgagttttattggaatg
aactcaaaatatgtacaatgcatgaattggacacttatgctgatgtcaaaccagaatata
agataacatcgattgactcgatacatggacaacacccaaacaattttttggcttggaata
gaacatcaagcaaaactgattcagagttgattcaaaatgagaaactccaaaacttggaag
ttggaaaaagaactgtagttgcttatcatttgataaaaccaccagaaaactacatgtccg
taggaaaaagcaattttcgaagatactatcatacctataaaggaagacaagatgcttatt
gggtgagaaaaaatagggaaaagatgatcaccttggatttgagatacgaagacttttcgg
attgcgatgagactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTTTCAATGAGCACTTGGGAATG 402 399 443 Antisense
GAATGGCAAACTATCTTCCGATACG 107 331 463 Antisense
CTATCTTCCGATACGAGTTTTATTG 332 223 473 Antisense
GGACACTTATGCTGATGTCAAACCA 207 525 531 Antisense
TTGACTCGATACATGGACAACACCC 113 705 575 Antisense
TGGACAACACCCAAACAATTTTTTG 80 547 588 Antisense
GAACTGTAGTTGCTTATCATTTGAT 139 349 692 Antisense
AACCACCAGAAAACTACATGTCCGT 301 147 719 Antisense
GAAGATACTATCATACCTATAAAGG 632 337 761 Antisense
GATCACCTTGGATTTGAGATACGAA 178 417 828 Antisense
GACTTTTCGGATTGCGATGAGACTG 634 369 853 Antisense
Sequence Source Affymetrix Proprietary Database