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[179225_at]

Description T10G3.2 /REP_DB=WormBase Gene ID /WP=CE13563 /TR=P92019 /GB=CAB03325.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 22      6grp_total > 22      4grp_total > 36      6grp_high1_sub > De      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 90.9
(1.6)
P 		75.6
(-0.3)
A 		53.9
(-3)
A 		101.8
(3)
M 		48
B 92.3
(-1.6)
P 		107.8
(3)
P 		87.4
(-3)
A 		89.1
(-2.5)
P 		20
C 74.2
(-1.4)
P 		93.6
(3)
A 		67
(-3)
A 		71.6
(-2)
P 		27
avr 85.8
(1.3) 		92.3
(3) 		69.4
(-3) 		87.5
(1.7) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 120
(3)
A 		83.2
(0.2)
A 		86
(0.4)
P 		75.2
(-0.5)
P 		83.2
(0.2)
M 		42.1
(-3)
A 		78
B 81.8
(1.3)
P 		76.3
(0.8)
P 		99.7
(3)
A 		83.6
(1.5)
P 		61.2
(-0.6)
P 		35
(-3)
P 		65
C 60
(-1.5)
A 		103.5
(3)
P 		79.2
(0.5)
A 		47.9
(-2.7)
A 		56.4
(-1.8)
P 		44.9
(-3)
A 		59
avr 87.3
(2.9) 		87.7
(2.9) 		88.3
(3) 		68.9
(0.6) 		66.9
(0.3) 		40.7
(-3) 		48
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 33.1
(3)
P 		16.4
(-2.3)
A 		14.1
(-3)
A 		14.9
(-2.7)
M 		19
B 29.4
(3)
P 		26.6
(1.4)
P 		20.2
(-2.3)
A 		19
(-3)
P 		10
C 24.6
(2.1)
P 		26.9
(3)
A 		23.4
(1.6)
A 		12.1
(-3)
P 		15
avr 29
(3) 		23.3
(0.5) 		19.2
(-1.3) 		15.3
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 22.1
(0.7)
A 		29.6
(3)
A 		18.7
(-0.4)
P 		19.1
(-0.3)
P 		25.1
(1.6)
M 		10.3
(-3)
A 		19
B 28.5
(3)
P 		25.4
(1.8)
P 		24.2
(1.3)
A 		22.1
(0.5)
P 		24.9
(1.6)
P 		13
(-3)
P 		16
C 22.2
(0.4)
A 		31.6
(3)
P 		20.2
(-0.1)
A 		9.6
(-3)
A 		18.2
(-0.7)
P 		15
(-1.5)
A 		22
avr 24.3
(1.3) 		28.9
(3) 		21
(0.1) 		16.9
(-1.5) 		22.7
(0.7) 		12.8
(-3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179225_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12969
Sequence Type Exemplar sequence
Representative Public ID T10G3.2 NCBI
Target Description T10G3.2 /REP_DB=WormBase Gene ID /WP=CE13563 /TR=P92019 /GB=CAB03325.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073943(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073943 NCBI Caenorhabditis elegans T10G3.2 (T10G3.2) mRNA, complete cds. 11/11 None
SNAP00000037914 ENSEMBL cdna:SNAP chromosome:CEL140:V:13479975:13482404:-1 10/11 None
GENEFINDER00000037925 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13479975:13487020:-1 11/11 None
T10G3.2 ENSEMBL cdna:known chromosome:CEL140:V:13479975:13482404:-1 gene:T10G3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13479974-13482404(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T10G3.2
Entrez Gene 188389 Entrez gene
SwissProt P92019 EMBL-EBI
WormBase CE13563 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03327 Hypothetical protein T10G3.4 [Caenorhabditis elegans] ref|NP_506345.1| T10G3.4 [Caenorhabditis elegans] 1.0E-159
blast CAB03325 Hypothetical protein T10G3.2 [Caenorhabditis elegans] ref|NP_506344.1| T10G3.2 [Caenorhabditis elegans] 1.0E-154
blast CAE62578 Hypothetical protein CBG06691 [Caenorhabditis briggsae] 1.0E-121
blast CAE62579 Hypothetical protein CBG06692 [Caenorhabditis briggsae] 4.0E-98
blast CAB03325 Hypothetical protein T10G3.2 [Caenorhabditis elegans] ref|NP_506344.1| T10G3.2 [Caenorhabditis elegans] 4.0E-94
blast CAE62579 Hypothetical protein CBG06692 [Caenorhabditis briggsae] 2.0E-62
blast CAE62578 Hypothetical protein CBG06691 [Caenorhabditis briggsae] 4.0E-22
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506344.1 7 20-42,55-77,103-125,137-156,171-190,218-240,262-284
T10G3.2 7 20-42,55-77,103-125,137-156,171-190,218-240,262-284
SNAP00000037914 4 26-48,63-82,110-132,154-176
GENEFINDER00000037925 14 13-35,45-67,88-107,122-144,157-179,202-224,245-264,330-352,364-386,415-437,449-468,483-502,530-552,574-596
Sequence
Target Sequence 
>C. ELEGANS:179225_AT
gacgcttggttacgcattggtttttgcgtgtattttggtgtatattgaatttgcaaatcg
acatgtgatgatggcaacaattccaacaagaaatattcaagttctgttcgcgatcatctg
ctcctggtcactgatccttttgttatttatcaaccgttcaaagtcgaaatctggaagagc
aaaatcggcactttctgaaagatatcaagtcaacgaaaacttgaaagcattgaggattca
tattccagttgtatgcgttgacactggcattcagataatgtttctctgctctgatatatt
ttggaatactgcgcaggtgttgaatctcaactattgctatgacgacaatatatacttgca
taaattcgtagtcttcagattgattggcttcatccttcaatacttcatacctttcataat
ccttcaccgcttcagtcaaatgtgttgtaattcacttcgtcgtcgtccagtaagacgatc
tcatccaatatctccatcccctgggacaagtccctcgtctgtagtcaccatccagaacgt
attcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGCTTGGTTACGCATTGGTTTTT 550 379 429 Antisense
TTCAAGTTCTGTTCGCGATCATCTG 427 685 524 Antisense
TCCTGGTCACTGATCCTTTTGTTAT 302 593 550 Antisense
GATAATGTTTCTCTGCTCTGATATA 121 423 702 Antisense
AATACTGCGCAGGTGTTGAATCTCA 685 171 733 Antisense
TTGGCTTCATCCTTCAATACTTCAT 384 707 812 Antisense
TACTTCATACCTTTCATAATCCTTC 538 645 829 Antisense
TCCTTCACCGCTTCAGTCAAATGTG 114 593 848 Antisense
TCACTTCGTCGTCGTCCAGTAAGAC 448 625 880 Antisense
AGACGATCTCATCCAATATCTCCAT 305 71 901 Antisense
GTAGTCACCATCCAGAACGTATTCG 38 457 949 Antisense
Sequence Source Affymetrix Proprietary Database