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[179224_s_at]

Description B0024.8 /REP_DB=WormBase Gene ID /WP=CE25738 /TR=Q17423 /GB=CAA94880.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 27      4grp_highest_8_8 > 60      4grp_high_8_8 > 25      6grp_highest_nonorm > 80      6grp_total > 16      4grp_total > 38      6grp_highest_sub > De      6grp_high1_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 584
1 2 3 4 range
A 438.4
(3)
P 		321.7
(1.1)
P 		69.1
(-3)
P 		197.3
(-0.9)
P 		369
B 523.8
(3)
P 		187.9
(-2)
P 		117.8
(-3)
P 		228.1
(-1.4)
P 		406
C 653.4
(3)
P 		142.8
(-2.5)
P 		92.1
(-3)
P 		295.1
(-0.8)
P 		561
avr 538.5
(3) 		217.5
(-1.3) 		93
(-3) 		240.2
(-1) 		446

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 238
1 2 3 4 5 6 range
A 328
(3)
P 		256
(1.2)
P 		140
(-1.7)
P 		89.6
(-3)
P 		93.5
(-2.9)
P 		189.4
(-0.5)
P 		238
B 304.6
(3)
P 		168
(-0.8)
P 		107.7
(-2.5)
P 		91.7
(-3)
P 		109.8
(-2.5)
P 		113
(-2.4)
P 		213
C 262.3
(3)
P 		206.2
(0.8)
P 		259.8
(2.9)
P 		112.5
(-2.8)
P 		106.8
(-3)
P 		121.5
(-2.4)
P 		156
avr 298.3
(3) 		210.1
(0.4) 		169.2
(-0.9) 		97.9
(-3) 		103.4
(-2.8) 		141.3
(-1.7) 		200
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 198
1 2 3 4 range
A 159.6
(3)
P 		69.8
(-0.8)
P 		18.1
(-3)
P 		28.9
(-2.5)
P 		142
B 167
(3)
P 		46.4
(-2.2)
P 		27.3
(-3)
P 		48.6
(-2.1)
P 		140
C 216.3
(3)
P 		41.1
(-2.7)
P 		32.1
(-3)
P 		49.8
(-2.4)
P 		184
avr 181
(3) 		52.4
(-2) 		25.8
(-3) 		42.4
(-2.4) 		155

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 60.5
(0.3)
P 		91.1
(3)
P 		30.5
(-2.3)
P 		22.7
(-3)
P 		28.2
(-2.5)
P 		46.1
(-0.9)
P 		68
B 106
(3)
P 		55.9
(-0.7)
P 		26.2
(-2.9)
P 		24.3
(-3)
P 		44.6
(-1.5)
P 		42.1
(-1.7)
P 		82
C 97.2
(3)
P 		62.9
(0.2)
P 		66.1
(0.5)
P 		22.6
(-3)
P 		34.6
(-2)
P 		40.7
(-1.5)
P 		75
avr 87.9
(3) 		70
(1.3) 		40.9
(-1.4) 		23.2
(-3) 		35.8
(-1.8) 		43
(-1.2) 		65
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179224_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12454
Sequence Type Exemplar sequence
Representative Public ID B0024.8 NCBI
Target Description B0024.8 /REP_DB=WormBase Gene ID /WP=CE25738 /TR=Q17423 /GB=CAA94880.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073248(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073248 NCBI Caenorhabditis elegans B0024.8 (B0024.8) mRNA, complete cds. 11/11 None
SNAP00000027129 ENSEMBL cdna:SNAP chromosome:CEL140:V:10299835:10304348:-1 10/11 None
GENEFINDER00000027154 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10301675:10306171:-1 11/11 None
B0024.8 ENSEMBL cdna:known chromosome:CEL140:V:10302085:10309934:-1 gene:B0024.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10302143-10309934(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0024.8
Entrez Gene 179433 Entrez gene
SwissProt Q17423 EMBL-EBI
WormBase CE25738 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1587960_AT similar to B0024.8 cfa
CANINE_2:CFA.14951.1.A1_S_AT similar to B0024.8 cfa
CANINE_2:CFAAFFX.21614.1.S1_S_AT similar to B0024.8 cfa
CHICKEN:GGAAFFX.7911.1.S1_S_AT similar to KIAA0423 gga
CHICKEN:GGAAFFX.7914.1.S1_AT similar to KIAA0423 gga
HU35KSUBB:RC_H17020_S_AT KIAA0423 hs
HU35KSUBC:RC_N49914_AT KIAA0423 hs
HU35KSUBC:RC_AA257077_AT KIAA0423 hs
HU35KSUBD:RC_AA405821_I_AT KIAA0423 hs
U133_X3P:HS.111373.0.S1_3P_AT KIAA0423 hs
HG-U133A_2:213304_AT KIAA0423 hs
HG-U133_PLUS_2:213304_AT KIAA0423 hs
HG-U133A:213304_AT KIAA0423 hs
HG-U95AV2:41457_AT KIAA0423 hs
HG-U95B:48124_AT KIAA0423 hs
MG-U74BV2:110446_AT RIKEN cDNA A430041B07 gene mm
MOE430B:1434843_AT RIKEN cDNA A430041B07 gene mm
MOUSE430_2:1434843_AT RIKEN cDNA A430041B07 gene mm
MOE430B:1441095_AT PREDICTED: LOAA0423 [Mus musculus], mRNA sequence mm
MOUSE430_2:1441095_AT PREDICTED: LOAA0423 [Mus musculus], mRNA sequence mm
MOE430B:1458067_AT PREDICTED: LOAA0423 [Mus musculus], mRNA sequence mm
MOUSE430_2:1458067_AT PREDICTED: LOAA0423 [Mus musculus], mRNA sequence mm
MU19KSUBA:TC20450_AT PREDICTED: LOAA0423 [Mus musculus], mRNA sequence mm
RG-U34A:RC_AI639048_AT similar to KIAA0423 (predicted) rn
RAE230A:1386217_AT similar to KIAA0423 (predicted) rn
RAT230_2:1386217_AT similar to KIAA0423 (predicted) rn
RAE230B:1393981_AT similar to KIAA0423 (predicted) rn
RAT230_2:1393981_AT similar to KIAA0423 (predicted) rn
RAE230B:1384172_AT Similar to KIAA0423 (predicted) rn
RAT230_2:1384172_AT Similar to KIAA0423 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAA94880 Hypothetical protein B0024.8 [Caenorhabditis elegans] ref|NP_505649.1| B0024.8 [Caenorhabditis elegans] 0.0
blast CAE64786 Hypothetical protein CBG09579 [Caenorhabditis briggsae] 0.0
blast XP_785383 PREDICTED: similar to putative protein of bilaterial origin (5K780) [Strongylocentrotus purpuratus] 5.0E-45
blast XP_785383 PREDICTED: similar to putative protein of bilaterial origin (5K780) [Strongylocentrotus purpuratus] 8.0E-45
Sequence
Target Sequence 
>C. ELEGANS:179224_S_AT
aaagcagttgcaagtgacactcgacttattgaagcattcatttcaagattaggggataca
aatggaaaagttgcatcgtgtgcaatggaaacatatatttctactatgggaagcatggcg
aaactctactcaactgaatctaatctaaaagcagtgatgaaccaacttgcacatgcattg
actgctcatctttccagtaaatcggaagagcacaagcatctagcaagaacatgtattcaa
catacaattcgatcaattgaaccagttagcttgcttcctgcaatgacatcagctacaaag
aaatcaaatgtaaaacaacgtccatttatcttgacacaatattgtgagttatccaaattg
gcatacaaaagcaaaccaaaacaagtcgaagtgatggctcttcctctattgtgggacagt
gtcaaaaatagtgcgccagatgttgataacaagaaagcaacacaatatcttgcaaaaact
cttgctaaacttattggggaaaaacaattgcttgacttggcaacttcagagtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGCAGTTGCAAGTGACACTCGAC 348 123 2995 Antisense
GTGATGAACCAACTTGCACATGCAT 691 483 3148 Antisense
CATGCATTGACTGCTCATCTTTCCA 159 211 3166 Antisense
GGAAGAGCACAAGCATCTAGCAAGA 321 531 3198 Antisense
TGAACCAGTTAGCTTGCTTCCTGCA 527 573 3252 Antisense
GCTTCCTGCAATGACATCAGCTACA 679 305 3267 Antisense
AACAACGTCCATTTATCTTGACACA 377 135 3308 Antisense
AAGTCGAAGTGATGGCTCTTCCTCT 21 159 3377 Antisense
GGCTCTTCCTCTATTGTGGGACAGT 32 539 3390 Antisense
AATAGTGCGCCAGATGTTGATAACA 27 173 3421 Antisense
TGCTTGACTTGGCAACTTCAGAGTT 51 579 3503 Antisense
Sequence Source Affymetrix Proprietary Database