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[179222_at]

Description F19C6.4 /REP_DB=WormBase Gene ID /WP=CE01557 /TR=Q09539 /GB=CAA88051.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 25      6grp_total > 23      4grp_total > 38      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 234
1 2 3 4 range
A 286
(3)
P 		156.7
(-0.8)
P 		81.4
(-3)
A 		127.6
(-1.6)
A 		205
B 247.1
(3)
P 		151.2
(-0)
P 		56
(-3)
A 		157.2
(0.2)
P 		191
C 289.8
(3)
P 		139.5
(-1.9)
P 		107.2
(-3)
P 		184.6
(-0.5)
P 		183
avr 274.3
(3) 		149.1
(-0.9) 		81.5
(-3) 		156.5
(-0.7) 		193

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 117
1 2 3 4 5 6 range
A 127.3
(3)
P 		115.5
(2.3)
P 		92
(0.8)
P 		100.1
(1.3)
P 		60.7
(-1.2)
P 		32.7
(-3)
A 		95
B 150
(3)
P 		126.9
(1.8)
P 		124.9
(1.7)
P 		98.5
(0.2)
P 		68
(-1.4)
P 		38.4
(-3)
A 		112
C 115
(3)
P 		87.6
(0.5)
P 		110.4
(2.6)
P 		64.9
(-1.6)
A 		69.1
(-1.2)
A 		49
(-3)
A 		66
avr 130.8
(3) 		110
(1.6) 		109.1
(1.6) 		87.8
(0.2) 		65.9
(-1.3) 		40
(-3) 		91
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 104.1
(3)
P 		34
(-1.9)
P 		21.3
(-2.8)
A 		18.7
(-3)
A 		85
B 78.8
(3)
P 		37.3
(-0.8)
P 		13
(-3)
A 		33.5
(-1.1)
P 		66
C 95.9
(3)
P 		40.1
(-2.2)
P 		37.4
(-2.4)
P 		31.1
(-3)
P 		65
avr 92.9
(3) 		37.1
(-1.9) 		23.9
(-3) 		27.8
(-2.7) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 23.5
(-0.2)
P 		41.1
(3)
P 		20
(-0.8)
P 		25.4
(0.2)
P 		18.3
(-1.1)
P 		8
(-3)
A 		33
B 52.2
(3)
P 		42.3
(1.4)
P 		30.3
(-0.5)
P 		26.1
(-1.1)
P 		27.6
(-0.9)
P 		14.3
(-3)
A 		38
C 42.6
(3)
P 		26.7
(-0.2)
P 		28.1
(0.1)
P 		13.1
(-3)
A 		22.4
(-1.1)
A 		16.4
(-2.3)
A 		30
avr 39.4
(3) 		36.7
(2.4) 		26.1
(-0) 		21.5
(-1.1) 		22.8
(-0.8) 		12.9
(-3) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179222_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17038
Sequence Type Exemplar sequence
Representative Public ID F19C6.4 NCBI
Target Description F19C6.4 /REP_DB=WormBase Gene ID /WP=CE01557 /TR=Q09539 /GB=CAA88051.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077279(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077279 NCBI Caenorhabditis elegans F19C6.4 (F19C6.4) mRNA, complete cds. 11/11 None
F19C6.4 ENSEMBL cdna:known chromosome:CEL140:X:10015020:10017602:-1 gene:F19C6.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10015019-10017602(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F19C6.4
Entrez Gene 184676 Entrez gene
SwissProt Q09539 EMBL-EBI
WormBase CE01557 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4245 neprilysin activity inferred from electronic annotation QuickGO AmiGO
8237 metallopeptidase activity inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA88263 Hypothetical protein F19C6.4 [Caenorhabditis elegans] emb|CAA88051.1| Hypothetical protein F19C6.4 [Caenorhabditis elegans] ref|NP_509680.1| F19C6.4 [Caenorhabditis elegans] 0.0
blast CAE58752 Hypothetical protein CBG01943 [Caenorhabditis briggsae] 0.0
blast AAF59425 Hypothetical protein Y19D10B.6 [Caenorhabditis elegans] ref|NP_503636.1| Y19D10B.6 [Caenorhabditis elegans] 1.0E-138
Protein Domains
Database ID Description E-Value
Pfam IPR000718 EMBL-EBI Peptidase M13, neprilysin 4.7E-82
Sequence
Target Sequence 
>C. ELEGANS:179222_AT
ccagaaatgatctcaaccagccagaaaaagcaatcgctgacacaatatttgtcacaacac
atgaaatcatgcatagggtgtatccctacggaaactttttgatgaactcaaatgtgacaa
cagctgcactgcaatgtgcacgacgagaggtgcagatgttgggagacaccgatgcagtga
aaccgataagtggatggttcaacaaagatgttgcccatgaagatgtcgtgaacataatgg
cgatgaggatgattatgaaaatggcgacaatcaagtctacaaatgaaaaacagctaaaag
aagcactcgaaacaattgtggggggactttgtaaacaatcagaaaggaaaaacgaactta
ttcctcatcataatccattggaaacatccctcaattgtgctgttcgacaatatcctcttt
tcaaaacgctgtatggctgtcgcataggggacagaatgtttgcaaaacatgaagaatttt
gcaagccgtttggagatgatgttaaagttgaagattatgcagtaaaaagtagttctgcaa
acaaggatgtaggcggtttctttaaagat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAGAAATGATCTCAACCAGCCAGA 396 273 947 Antisense
GTATCCCTACGGAAACTTTTTGATG 487 453 1026 Antisense
ATGTGACAACAGCTGCACTGCAATG 10 51 1058 Antisense
GGGAGACACCGATGCAGTGAAACCG 598 495 1107 Antisense
GATGTTGCCCATGAAGATGTCGTGA 39 411 1153 Antisense
GAACTTATTCCTCATCATAATCCAT 163 351 1300 Antisense
GAAACATCCCTCAATTGTGCTGTTC 563 355 1327 Antisense
CTGTTCGACAATATCCTCTTTTCAA 231 239 1346 Antisense
AACGCTGTATGGCTGTCGCATAGGG 656 143 1371 Antisense
GAATTTTGCAAGCCGTTTGGAGATG 89 325 1420 Antisense
GGATGTAGGCGGTTTCTTTAAAGAT 161 513 1491 Antisense
Sequence Source Affymetrix Proprietary Database