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[179221_s_at]

Description D1025.1 /REP_DB=WormBase Gene ID /WP=CE17609 /TR=O62124 /GB=CAB05474.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 23      4grp_high_8_8 > 32      6grp_total > 12      4grp_total > 47      6grp_high1_sub > 02      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 264
1 2 3 4 range
A 435.1
(3)
P 		206.6
(-3)
P 		235.9
(-2.2)
A 		248.6
(-1.9)
P 		229
B 407.8
(3)
P 		244.5
(-1.5)
P 		191.5
(-2.9)
P 		188.1
(-3)
P 		220
C 452.4
(3)
P 		232.4
(-2.6)
M 		227.4
(-2.8)
P 		218.1
(-3)
P 		234
avr 431.8
(3) 		227.8
(-2.7) 		218.3
(-3) 		218.3
(-3) 		214

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 181
1 2 3 4 5 6 range
A 281.7
(0.6)
P 		341
(3)
P 		269
(0.1)
P 		306
(1.6)
P 		211.1
(-2.2)
A 		191.6
(-3)
P 		149
B 292
(2.1)
P 		315.1
(3)
P 		217.6
(-0.9)
P 		267.8
(1.1)
P 		207.5
(-1.3)
P 		165.4
(-3)
P 		150
C 286.7
(0.8)
P 		346.1
(3)
P 		339.9
(2.8)
P 		295.9
(1.2)
P 		210.2
(-2)
P 		182.5
(-3)
P 		164
avr 286.8
(1.2) 		334.1
(3) 		275.5
(0.7) 		289.9
(1.3) 		209.6
(-1.8) 		179.8
(-3) 		154
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 158.4
(3)
P 		44.8
(-2.6)
P 		61.7
(-1.8)
A 		36.4
(-3)
P 		122
B 130.1
(3)
P 		60.4
(-1.6)
P 		44.4
(-2.7)
P 		40.1
(-3)
P 		90
C 149.7
(3)
P 		66.8
(-1.4)
M 		79.3
(-0.7)
P 		36.8
(-3)
P 		113
avr 146.1
(3) 		57.3
(-1.9) 		61.8
(-1.7) 		37.8
(-3) 		108

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 51.9
(-2.6)
P 		121.3
(3)
P 		58.6
(-2)
P 		77.6
(-0.5)
P 		63.7
(-1.6)
A 		46.6
(-3)
P 		75
B 101.6
(2.6)
P 		104.9
(3)
P 		52.8
(-3)
P 		70.9
(-0.9)
P 		84.3
(0.6)
P 		61.7
(-2)
P 		52
C 106.3
(3)
P 		105.6
(2.9)
P 		86.5
(0.5)
P 		59.5
(-3)
P 		68
(-1.9)
P 		61.1
(-2.8)
P 		47
avr 86.6
(0.3) 		110.6
(3) 		66
(-1.9) 		69.3
(-1.6) 		72
(-1.3) 		56.5
(-3) 		54
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179221_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17771
Sequence Type Exemplar sequence
Representative Public ID D1025.1 NCBI
Target Description D1025.1 /REP_DB=WormBase Gene ID /WP=CE17609 /TR=O62124 /GB=CAB05474.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078014(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078014 NCBI Caenorhabditis elegans D1025.1 (D1025.1) mRNA, complete cds. 11/11 None
SNAP00000016222 ENSEMBL cdna:SNAP chromosome:CEL140:X:14520697:14522322:1 11/11 None
GENEFINDER00000016231 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14520697:14523875:1 9/11 None
D1025.1 ENSEMBL cdna:known chromosome:CEL140:X:14520682:14522568:1 gene:D1025.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14520696-14522322(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D1025.1
Entrez Gene 181547 Entrez gene
SwissProt O62124 EMBL-EBI
WormBase CE17609 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05474 Hypothetical protein D1025.1 [Caenorhabditis elegans] ref|NP_510415.1| D1025.1 [Caenorhabditis elegans] 1.0E-179
blast CAB05474 Hypothetical protein D1025.1 [Caenorhabditis elegans] ref|NP_510415.1| D1025.1 [Caenorhabditis elegans] 1.0E-148
blast CAC42279 Hypothetical protein D1025.6 [Caenorhabditis elegans] emb|CAB05471.1| Hypothetical protein D1025.4 [Caenorhabditis elegans] ref|NP_510416.1| Nematode Specific Peptide family, group C family member (nspc-16) [Caenorhabditis elegans] ref|NP_510417.1| Nematode Specific Peptide family, group C family member (nspc-20) [Caenorhabditis elegans] 9.0E-56
blast CAE17765 Hypothetical protein D1025.9 [Caenorhabditis elegans] emb|CAE17764.1| Hypothetical protein D1025.8 [Caenorhabditis elegans] ref|NP_001024512.1| Nematode Specific Peptide family, group C family member (nspc-19) [Caenorhabditis elegans] ref|NP_001024511.1| Nematode Specific Peptide family, group C family member (nspc-17) [Caenorhabditis elegans] 4.0E-55
Sequence
Target Sequence 
>C. ELEGANS:179221_S_AT
aaagctggtacacgcagtcatctgcccaaaaaagtttgaaaaactcccaactggacttca
acagatttgccaactggatcgcatggattttcttgatggaataacgctagaaggagtttt
gtacccaaaaccagtaattatcatggcttctcgaccaatttacctagatctgcacaagga
tatcgatgaacatgaaaaatcgcatttccagtggttggtcagtatgatacatgtgcgtgg
aatcgacttccaagtgctagaaaaccctaccctttacgacgacgcaattacggtaattca
atactatgctggagaaggtacagatgcagaagctcgccttcaacgagaaaaagcacaagt
gctaaaactattaagcacgggaaaactacttgataagtcggagactatcaaaaaagcaca
gttgttgcaactaaagttgaacgaagtcgagtcaagcgaacaagcggaagaggtgtttgc
aaagttttccaaaaacattctgccttgcgtcgcagctggatataaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGCTGGTACACGCAGTCATCTGC 137 123 486 Antisense
AAACTCCCAACTGGACTTCAACAGA 3 129 526 Antisense
GATTTGCCAACTGGATCGCATGGAT 310 427 549 Antisense
AATTATCATGGCTTCTCGACCAATT 662 175 621 Antisense
TCGACCAATTTACCTAGATCTGCAC 678 601 636 Antisense
ATCGCATTTCCAGTGGTTGGTCAGT 427 35 684 Antisense
TCCAAGTGCTAGAAAACCCTACCCT 620 585 734 Antisense
TACCCTTTACGACGACGCAATTACG 504 641 753 Antisense
GATGCAGAAGCTCGCCTTCAACGAG 376 413 808 Antisense
TCCAAAAACATTCTGCCTTGCGTCG 115 585 973 Antisense
GCCTTGCGTCGCAGCTGGATATAAA 89 281 987 Antisense
Sequence Source Affymetrix Proprietary Database