[Home] | [Total List]

[179220_s_at]

Description F53H4.2 /REP_DB=WormBase Gene ID /WP=CE11030 /TR=Q93778 /GB=CAB03134.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 32      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 2.8
(-3)
A 		5.2
(2.5)
A 		3.7
(-0.9)
A 		5.4
(3)
A 		3
B 1.6
(-3)
A 		3.2
(2.1)
A 		3.5
(3)
A 		3.2
(2.1)
A 		2
C 4.6
(1.5)
A 		2.5
(-3)
A 		5.3
(3)
A 		3
(-1.9)
A 		3
avr 3
(-3) 		3.6
(0) 		4.2
(3) 		3.9
(1.5) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 101
1 2 3 4 5 6 range
A 14.6
(-2.2)
A 		2.1
(-3)
A 		1.6
(-3)
A 		26.7
(-1.5)
A 		7.1
(-2.7)
A 		102.4
(3)
A 		101
B 5
(-2.3)
A 		5.6
(-2.1)
A 		4
(-2.6)
A 		2.5
(-3)
A 		2.9
(-2.9)
A 		24.2
(3)
A 		22
C 4.7
(-2.5)
A 		2.7
(-3)
A 		6.9
(-2)
A 		7.7
(-1.8)
A 		7.4
(-1.8)
A 		27.1
(3)
A 		24
avr 8.1
(-2.4) 		3.5
(-3) 		4.2
(-2.9) 		12.3
(-1.9) 		5.8
(-2.7) 		51.2
(3) 		48
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 1
(1)
A 		1.1
(3)
A 		1
(1)
A 		0.8
(-3)
A 		0
B 0.5
(-3)
A 		0.8
(3)
A 		0.8
(3)
A 		0.7
(1)
A 		0
C 1.5
(1.3)
A 		0.7
(-2.1)
A 		1.9
(3)
A 		0.5
(-3)
A 		1
avr 1
(0.6) 		0.9
(-0.6) 		1.2
(3) 		0.7
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 2.7
(-2.4)
A 		0.7
(-2.9)
A 		0.3
(-3)
A 		6.8
(-1.4)
A 		2.1
(-2.6)
A 		24.9
(3)
A 		25
B 1.7
(-2.3)
A 		1.9
(-2.1)
A 		1
(-2.8)
A 		0.7
(-3)
A 		1.2
(-2.6)
A 		9
(3)
A 		8
C 1.7
(-2.3)
A 		0.8
(-3)
A 		1.7
(-2.3)
A 		1.5
(-2.5)
A 		2.4
(-1.8)
A 		9.1
(3)
A 		8
avr 2
(-2.5) 		1.1
(-3) 		1
(-3) 		3
(-2.1) 		1.9
(-2.6) 		14.3
(3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179220_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17980
Sequence Type Exemplar sequence
Representative Public ID F53H4.2 NCBI
Target Description F53H4.2 /REP_DB=WormBase Gene ID /WP=CE11030 /TR=Q93778 /GB=CAB03134.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078207(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078207 NCBI Caenorhabditis elegans F53H4.2 (F53H4.2) mRNA, complete cds. 11/11 None
F53H4.2 ENSEMBL cdna:known chromosome:CEL140:X:15857074:15858796:1 gene:F53H4.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000026502 3/11 Cross Hyb Matching Probes None
GENEFINDER00000026512 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15857086-15858796(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F53H4.2
Entrez Gene 181673 Entrez gene
SwissProt Q93778 EMBL-EBI
WormBase CE11030 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4289 subtilase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03134 Hypothetical protein F53H4.2 [Caenorhabditis elegans] ref|NP_510608.1| F53H4.2 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:179220_S_AT
acttgttctgattgaagctgcgctcaaaggaattgatatatttaaaactttgggagaata
cggacaacttcaacgagctgatggacagtctccaagcgaaaatgaagatatctcgacaat
tgtgacgaatattgcagctcgacttaaaacattattgcattttataaatttcgatggaac
tgcgctgaaatctagactgcctcatttaagaatgaatttcacacaagacaagtttgaatg
gcaacagctggacaaaacttggaaaatattactaaaaacgtactttttgaattttcggaa
ggattcgaaaatcgatgacaagaacgaggctccttgccatgcttttcgcgaatttcggaa
taacgtgtccttgactcaccaaggctttctggattctttcccatcttctgagcggaccat
tcttgtcacagttgtccttgactcgggaatgtatggaaatgtatttctgcatcgcatatc
atcggacatgttatcgtcgtcaatcgagtcgggggtctca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTTGTTCTGATTGAAGCTGCGCTC 645 103 522 Antisense
AATACGGACAACTTCAACGAGCTGA 498 171 578 Antisense
GAGCTGATGGACAGTCTCCAAGCGA 363 387 596 Antisense
ACTGCGCTGAAATCTAGACTGCCTC 337 99 700 Antisense
ACAAGAACGAGGCTCCTTGCCATGC 137 113 839 Antisense
GAATAACGTGTCCTTGACTCACCAA 617 325 879 Antisense
GACTCACCAAGGCTTTCTGGATTCT 60 373 894 Antisense
TGAGCGGACCATTCTTGTCACAGTT 307 569 930 Antisense
GTCACAGTTGTCCTTGACTCGGGAA 109 463 946 Antisense
TTCTGCATCGCATATCATCGGACAT 560 691 986 Antisense
GTCGTCAATCGAGTCGGGGGTCTCA 52 473 1017 Antisense
Sequence Source Affymetrix Proprietary Database