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[179216_at]

Description R07H5.7 /REP_DB=WormBase Gene ID /WP=CE12562 /TR=P90944 /GB=CAB03232.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 16      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 6.2
(-3)
A 		16.6
(-1.7)
A 		52.5
(3)
A 		39.3
(1.3)
A 		46
B 24.9
(-2.4)
A 		25.6
(-2.3)
A 		20.9
(-3)
A 		60.2
(3)
A 		39
C 1.6
(-3)
A 		27.6
(-1.5)
A 		19.7
(-2)
A 		106.3
(3)
A 		105
avr 10.9
(-3) 		23.3
(-1.7) 		31
(-0.9) 		68.6
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 29.4
(-0.1)
A 		2.9
(-3)
A 		11.5
(-2)
A 		9.3
(-2.3)
A 		32.7
(0.3)
A 		57.2
(3)
A 		54
B 1.9
(-3)
A 		11.1
(-2)
A 		35.1
(0.6)
A 		57.7
(3)
P 		4.1
(-2.7)
A 		1.5
(-3)
A 		56
C 11.5
(-2.4)
A 		5.6
(-2.8)
A 		61.8
(1.7)
A 		78.4
(3)
A 		3.6
(-3)
A 		4.4
(-2.9)
A 		75
avr 14.3
(-1.9) 		6.5
(-3) 		36.1
(1.2) 		48.5
(3) 		13.5
(-2) 		21
(-0.9) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 2.3
(-3)
A 		3.6
(-2.3)
A 		13.7
(3)
A 		5.8
(-1.2)
A 		11
B 7.9
(-0.7)
A 		6.3
(-1.9)
A 		4.9
(-3)
A 		12.8
(3)
A 		8
C 0.5
(-3)
A 		7.9
(-0.4)
A 		6.9
(-0.8)
A 		17.9
(3)
A 		17
avr 3.6
(-3) 		5.9
(-1.4) 		8.5
(0.4) 		12.2
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 5.4
(-1)
A 		1
(-3)
A 		2.5
(-2.3)
A 		2.4
(-2.3)
A 		9.9
(1.1)
A 		13.9
(3)
A 		13
B 0.7
(-2.9)
A 		3.7
(-1.7)
A 		8.5
(0.2)
A 		15.3
(3)
P 		1.7
(-2.5)
A 		0.5
(-3)
A 		15
C 4.3
(-1.7)
A 		1.7
(-2.8)
A 		15.7
(3)
A 		15.8
(3)
A 		1.2
(-3)
A 		1.5
(-2.9)
A 		15
avr 3.5
(-2.1) 		2.1
(-3) 		8.9
(1.5) 		11.2
(3) 		4.3
(-1.5) 		5.3
(-0.9) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179216_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9228
Sequence Type Exemplar sequence
Representative Public ID R07H5.7 NCBI
Target Description R07H5.7 /REP_DB=WormBase Gene ID /WP=CE12562 /TR=P90944 /GB=CAB03232.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069699(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069699 NCBI Caenorhabditis elegans R07H5.7 (R07H5.7) mRNA, complete cds. 11/11 None
R07H5.7 ENSEMBL cdna:known chromosome:CEL140:IV:11188862:11189609:-1 gene:R07H5.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030261 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11188867-11189615(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R07H5.7
Entrez Gene 187689 Entrez gene
SwissProt P90944 EMBL-EBI
WormBase CE12562 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03232 Hypothetical protein R07H5.7 [Caenorhabditis elegans] ref|NP_502100.1| R07H5.7 [Caenorhabditis elegans] 1.0E-118
blast CAB04877 Hypothetical protein T27E9.8 [Caenorhabditis elegans] ref|NP_499788.1| T27E9.8 [Caenorhabditis elegans] 1.0E-36
blast CAI06058 Hypothetical protein C44B9.6 [Caenorhabditis elegans] ref|NP_001021216.1| C44B9.6 [Caenorhabditis elegans] 5.0E-23
Sequence
Target Sequence 
>C. ELEGANS:179216_AT
catttgggtcagattctcacgcgtgactcagaaggatattggaaattaataataagaatg
caactcacaagatttatagatcatattcttgaattgttccatctatcaggtcttcatgaa
ctatccttctgtgaatgcaactatgattattcaaccaatcagcccaaaagattccaatcc
gttatcgtctcaaacttcacgtttataaagatatgggagtacatcccattgaagataaac
gacttgttggcttcaaatagttccacaatatgtatgggttatcaagtacccccaaaagat
atatgtacatttctaaagcattggattcatggatcgaacgaacaactgaagcagttaata
atgatgtttcctctcagttttaataaaaatgattttatcccaatcgccttgaatggtatt
aaatatcaattggcaccggtcgagaggaaacttgtttttatacaagatacgtataaatgg
tatgataaagaagttgaagttgaaggaggtttggatattcaaaggatcgatggaaccaac
gccactattactctacctgaagag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATTTGGGTCAGATTCTCACGCGTG 212 215 25 Antisense
ATTGTTCCATCTATCAGGTCTTCAT 527 5 117 Antisense
GTCTTCATGAACTATCCTTCTGTGA 403 469 134 Antisense
ATTATTCAACCAATCAGCCCAAAAG 117 13 170 Antisense
AAGATTCCAATCCGTTATCGTCTCA 378 155 192 Antisense
GATAAACGACTTGTTGGCTTCAAAT 629 379 258 Antisense
AATGATGTTTCCTCTCAGTTTTAAT 674 163 384 Antisense
TATCCCAATCGCCTTGAATGGTATT 159 657 420 Antisense
GGCACCGGTCGAGAGGAAACTTGTT 222 467 456 Antisense
GGATCGATGGAACCAACGCCACTAT 253 511 548 Antisense
CGCCACTATTACTCTACCTGAAGAG 322 257 564 Antisense
Sequence Source Affymetrix Proprietary Database