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[179215_at]

Description K06G5.3 /REP_DB=WormBase Gene ID /WP=CE18853 /TR=Q9XUU0 /GB=CAB04580.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 17      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 7.6
(-3)
A 		12.4
(0.9)
A 		8.2
(-2.5)
A 		14.9
(3)
A 		7
B 6.8
(-1.4)
A 		13
(1.1)
A 		17.5
(3)
A 		3
(-3)
A 		15
C 9.5
(-2.5)
A 		9.9
(-2.4)
A 		7.5
(-3)
A 		32.8
(3)
A 		25
avr 8
(-3) 		11.8
(-0.4) 		11.1
(-0.9) 		16.9
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 10.3
(1.6)
A 		7.6
(-0.6)
A 		8
(-0.3)
A 		4.6
(-3)
A 		8.3
(-0)
A 		12.1
(3)
A 		8
B 9.4
(-2)
A 		9.3
(-2)
A 		4.4
(-3)
A 		34.7
(3)
A 		10.4
(-1.8)
A 		6.4
(-2.6)
A 		30
C 6.2
(-2.8)
A 		18.4
(3)
A 		10.1
(-0.9)
A 		9
(-1.4)
A 		5.7
(-3)
A 		6
(-2.9)
A 		13
avr 8.6
(-2.2) 		11.8
(0) 		7.5
(-3) 		16.1
(3) 		8.1
(-2.6) 		8.2
(-2.5) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 2.8
(3)
A 		2.7
(2.1)
A 		2.1
(-3)
A 		2.2
(-2.1)
A 		1
B 2.2
(-0.3)
A 		3.2
(1.5)
A 		4.1
(3)
A 		0.6
(-3)
A 		4
C 3.1
(-2)
A 		2.8
(-2.6)
A 		2.6
(-3)
A 		5.5
(3)
A 		3
avr 2.7
(-3) 		2.9
(3) 		2.9
(3) 		2.8
(-0) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 1.9
(-0.7)
A 		2.7
(2)
A 		1.7
(-1.3)
A 		1.2
(-3)
A 		2.5
(1.3)
A 		3
(3)
A 		2
B 3.3
(-1.4)
A 		3.1
(-1.5)
A 		1.1
(-3)
A 		9.2
(3)
A 		4.2
(-0.7)
A 		2.4
(-2)
A 		8
C 2.3
(-2.2)
A 		5.6
(3)
A 		2.6
(-1.7)
A 		1.8
(-3)
A 		1.8
(-3)
A 		2
(-2.7)
A 		4
avr 2.5
(-1.2) 		3.8
(2.2) 		1.8
(-3) 		4.1
(3) 		2.8
(-0.4) 		2.5
(-1.2) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179215_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17906
Sequence Type Exemplar sequence
Representative Public ID K06G5.3 NCBI
Target Description K06G5.3 /REP_DB=WormBase Gene ID /WP=CE18853 /TR=Q9XUU0 /GB=CAB04580.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077967(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077967 NCBI Caenorhabditis elegans K06G5.3 (K06G5.3) mRNA, complete cds. 11/11 None
GENEFINDER00000010477 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14219383:14223176:-1 9/11 None
K06G5.3 ENSEMBL cdna:known chromosome:CEL140:X:14219488:14223176:-1 gene:K06G5.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000010473 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14219487-14223176(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K06G5.3
Entrez Gene 187069 Entrez gene
SwissProt Q9XUU0 EMBL-EBI
WormBase CE18853 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04580 Hypothetical protein K06G5.3 [Caenorhabditis elegans] ref|NP_510368.1| K06G5.3 [Caenorhabditis elegans] 1.0E-164
blast CAB04580 Hypothetical protein K06G5.3 [Caenorhabditis elegans] ref|NP_510368.1| K06G5.3 [Caenorhabditis elegans] 1.0E-147
Sequence
Target Sequence 
>C. ELEGANS:179215_AT
aatcgcggcaccagaactggcttcaccactacacggcgacattaatgctcgggaagtttc
cgagagtcttctaagaatggaagatgaaagacagactgaaactgaaactgctgacctcga
tgcacaagaacatgaagaaactgtctcgcagggtacacatggggccacgccactagcaaa
aattgcacatgactctgagcaacacatagataatattccagagagagcgtcctcttccag
agacatgatgactgcaacttctgaaacttcacaagctccagaggtaattcccaatctacc
atcaaaacgacgggttcctcgcaaatatccatttctatctcttggagtgattagccaacc
ttcagcaaatcctcgaagaaatccccggcttccaattgaaactattccgacttcaccatc
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCGCGGCACCAGAACTGGCTTCA 87 169 570 Antisense
TTCACCACTACACGGCGACATTAAT 575 687 591 Antisense
CTGAAACTGCTGACCTCGATGCACA 92 237 671 Antisense
AGAAACTGTCTCGCAGGGTACACAT 707 71 705 Antisense
GGGCCACGCCACTAGCAAAAATTGC 457 485 731 Antisense
ATTCCAGAGAGAGCGTCCTCTTCCA 617 7 784 Antisense
TAATTCCCAATCTACCATCAAAACG 387 631 854 Antisense
GGAGTGATTAGCCAACCTTCAGCAA 283 517 913 Antisense
CAAATCCTCGAAGAAATCCCCGGCT 41 187 935 Antisense
ATCCCCGGCTTCCAATTGAAACTAT 250 39 950 Antisense
TGAAACTATTCCGACTTCACCATCA 430 573 966 Antisense
Sequence Source Affymetrix Proprietary Database