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[179213_at]

Description F07A5.6 /REP_DB=WormBase Gene ID /WP=CE05559 /TR=Q19141 /GB=CAA96620.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 17      6grp_total > 29      4grp_total > 22      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 120
1 2 3 4 range
A 99
(-0.9)
M 		103.9
(-0.5)
P 		72.3
(-3)
A 		148.8
(3)
P 		77
B 97.9
(-0.6)
M 		91.7
(-1.3)
A 		76.6
(-3)
P 		130.3
(3)
P 		54
C 192
(3)
P 		77.6
(-3)
A 		83.3
(-2.7)
P 		140
(0.3)
P 		114
avr 129.6
(2) 		91.1
(-1.7) 		77.4
(-3) 		139.7
(3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 108.3
(3)
P 		86.9
(1.6)
A 		38.7
(-1.7)
A 		19.3
(-3)
A 		71.1
(0.5)
A 		36.2
(-1.9)
A 		89
B 124.2
(3)
P 		45.4
(-2.6)
A 		40.2
(-3)
A 		48.5
(-2.4)
A 		62.1
(-1.4)
A 		63.6
(-1.3)
P 		84
C 114.8
(3)
P 		66.9
(-1.1)
P 		65.1
(-1.3)
A 		53.8
(-2.2)
A 		94.6
(1.3)
A 		45
(-3)
A 		70
avr 115.8
(3) 		66.4
(-0.9) 		48
(-2.4) 		40.5
(-3) 		75.9
(-0.2) 		48.3
(-2.4) 		75
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 36.1
(3)
M 		22.5
(-1.7)
P 		18.9
(-3)
A 		21.8
(-2)
P 		17
B 31.2
(3)
M 		22.7
(-0.8)
A 		17.8
(-3)
P 		27.8
(1.5)
P 		13
C 63.6
(3)
P 		22.3
(-3)
A 		29
(-2)
P 		23.6
(-2.8)
P 		41
avr 43.6
(3) 		22.5
(-2.8) 		21.9
(-3) 		24.4
(-2.3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 20
(0.5)
P 		30.9
(3)
A 		8.4
(-2.2)
A 		4.9
(-3)
A 		21.5
(0.8)
A 		8.8
(-2.1)
A 		26
B 43.2
(3)
P 		15.1
(-2)
A 		9.8
(-3)
A 		12.8
(-2.5)
A 		25.2
(-0.2)
A 		23.7
(-0.5)
P 		33
C 42.5
(3)
P 		20.4
(-1.2)
P 		16.6
(-1.9)
A 		10.8
(-3)
A 		30.6
(0.7)
A 		15.1
(-2.2)
A 		32
avr 35.2
(3) 		22.1
(-0.1) 		11.6
(-2.5) 		9.5
(-3) 		25.8
(0.8) 		15.9
(-1.5) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179213_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.363
Sequence Type Exemplar sequence
Representative Public ID F07A5.6 NCBI
Target Description F07A5.6 /REP_DB=WormBase Gene ID /WP=CE05559 /TR=Q19141 /GB=CAA96620.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059683
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059683 NCBI Caenorhabditis elegans F07A5.6 (F07A5.6) mRNA, complete cds. None
F07A5.6 ENSEMBL cdna:known chromosome:CEL140:I:7375524:7379669:-1 gene:F07A5.6 None
SNAP00000034787 ENSEMBL cdna:SNAP chromosome:CEL140:I:7375612:7376289:-1 None
GENEFINDER00000034796 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7375612:7381831:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7375459-7376220(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F07A5.6
Entrez Gene 184109 Entrez gene
SwissProt Q19141 EMBL-EBI
WormBase CE32852 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA96620 Hypothetical protein F07A5.6 [Caenorhabditis elegans] ref|NP_492084.2| F07A5.6 [Caenorhabditis elegans] 1.0E-116
blast CAA96620 Hypothetical protein F07A5.6 [Caenorhabditis elegans] ref|NP_492084.2| F07A5.6 [Caenorhabditis elegans] 2.0E-77
blast CAE66606 Hypothetical protein CBG11931 [Caenorhabditis briggsae] 5.0E-47
blast CAE66606 Hypothetical protein CBG11931 [Caenorhabditis briggsae] 7.0E-47
blast CAA96620 Hypothetical protein F07A5.6 [Caenorhabditis elegans] ref|NP_492084.2| F07A5.6 [Caenorhabditis elegans] 7.0E-16
Sequence
Target Sequence 
>C. ELEGANS:179213_AT
cccttcaccatatcatcaactctgacaaaaacccaaagcagttgtttataattcacgcgt
tcccagacatgcaatctcttcctgttttctttgcagttgttttgctgctttgcgtatcac
cagcaaatcaagctctgacactgaagatccaattgctcatggacttgatccttctcttta
ttctccaaatgctccaattatcattgaaaataacaatacagctattcacaaaacgagtgt
cgcttcaagttcaagcccaacacctcaacaacctcgaggtctcggtctactccattgttc
actgctgtactttgcagttcgaaagcgtttacgcgttacagtcacaaaaattgaaggcaa
gtattttattctgcgggtttccacaagttttgacctttctctgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCTTCACCATATCATCAACTCTGA 110 259 38 Antisense
GTTGTTTATAATTCACGCGTTCCCA 671 437 78 Antisense
TCTCTTCCTGTTTTCTTTGCAGTTG 417 613 112 Antisense
TGTTTTGCTGCTTTGCGTATCACCA 553 561 135 Antisense
ATGGACTTGATCCTTCTCTTTATTC 609 51 196 Antisense
GTGTCGCTTCAAGTTCAAGCCCAAC 99 487 274 Antisense
AACAACCTCGAGGTCTCGGTCTACT 690 131 304 Antisense
TACTCCATTGTTCACTGCTGTACTT 439 647 325 Antisense
AAGCGTTTACGCGTTACAGTCACAA 143 149 360 Antisense
GTATTTTATTCTGCGGGTTTCCACA 574 451 398 Antisense
TCCACAAGTTTTGACCTTTCTCTGC 109 589 417 Antisense
Sequence Source Affymetrix Proprietary Database