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[179212_at]

Description T01G5.3 /REP_DB=WormBase Gene ID /WP=CE12978 /TR=O18010 /GB=CAB03267.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 02      6grp_cgc > 99      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 127
1 2 3 4 range
A 35.7
(-3)
P 		52.7
(-1.3)
A 		65.3
(-0.1)
P 		97.5
(3)
P 		62
B 51.6
(-0.3)
P 		61.1
(3)
A 		57.1
(1.6)
A 		43.6
(-3)
A 		18
C 56.3
(-1.6)
P 		26
(-3)
A 		27.1
(-2.9)
A 		152.8
(3)
P 		127
avr 47.9
(-2.8) 		46.6
(-3) 		49.8
(-2.6) 		98
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 71.6
(3)
A 		18.8
(-2)
A 		40.2
(0)
A 		8.5
(-3)
A 		71.5
(3)
P 		52.5
(1.2)
M 		63
B 37.5
(-0.3)
A 		33.2
(-1.1)
A 		29.1
(-1.8)
A 		56.7
(3)
P 		49.4
(1.7)
P 		22.2
(-3)
A 		35
C 30.6
(-2.5)
A 		71.1
(3)
P 		32
(-2.3)
A 		27
(-3)
A 		45.2
(-0.5)
P 		40.8
(-1.1)
A 		44
avr 46.6
(0.9) 		41
(-0.5) 		33.8
(-2.2) 		30.7
(-3) 		55.4
(3) 		38.5
(-1.1) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 13
(-1.3)
P 		11.4
(-3)
A 		17.1
(3)
P 		14.3
(0.1)
P 		6
B 16.5
(3)
P 		15.1
(1.8)
A 		13.2
(0.2)
A 		9.3
(-3)
A 		7
C 18.6
(0.6)
P 		7.5
(-3)
A 		9.4
(-2.4)
A 		25.8
(3)
P 		18
avr 16
(2.4) 		11.3
(-3) 		13.2
(-0.8) 		16.5
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 13.2
(0.4)
A 		6.7
(-1.6)
A 		8.8
(-1)
A 		2.2
(-3)
A 		21.6
(3)
P 		12.8
(0.3)
M 		19
B 13.1
(-0.2)
A 		11
(-1.2)
A 		7.1
(-3)
A 		15
(0.6)
P 		20.1
(3)
P 		8.3
(-2.4)
A 		13
C 11.3
(-0.8)
A 		21.7
(3)
P 		8.1
(-2)
A 		5.4
(-3)
A 		14.6
(0.4)
P 		13.7
(0.1)
A 		16
avr 12.5
(-0.3) 		13.1
(-0) 		8
(-2.7) 		7.5
(-3) 		18.8
(3) 		11.6
(-0.8) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179212_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12732
Sequence Type Exemplar sequence
Representative Public ID T01G5.3 NCBI
Target Description T01G5.3 /REP_DB=WormBase Gene ID /WP=CE12978 /TR=O18010 /GB=CAB03267.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074329(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074329 NCBI Caenorhabditis elegans Serpentine Receptor, class J family member (srj-27) (srj-27) mRNA, complete cds. 11/11 None
SNAP00000029273 ENSEMBL cdna:SNAP chromosome:CEL140:V:15128798:15130099:-1 11/11 None
GENEFINDER00000029276 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15124433:15130099:-1 11/11 None
T01G5.3 ENSEMBL cdna:known chromosome:CEL140:V:15128798:15130099:-1 gene:T01G5.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15128797-15130099(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srj-27
Ensembl T01G5.3
Entrez Gene 187956 Entrez gene
SwissProt O18010 EMBL-EBI
WormBase CE12978 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03267 Hypothetical protein T01G5.3 [Caenorhabditis elegans] ref|NP_506730.1| Serpentine Receptor, class J family member (srj-27) [Caenorhabditis elegans] 0.0
blast CAB03266 Hypothetical protein T01G5.2 [Caenorhabditis elegans] ref|NP_506729.1| T01G5.2 [Caenorhabditis elegans] 0.0
blast NP_503298 Y49C4A.8a [Caenorhabditis elegans] gb|AAK72318.1| Hypothetical protein Y49C4A.8a [Caenorhabditis elegans] 1.0E-180
blast AAB42344 Udp-glucuronosyltransferase protein 28 [Caenorhabditis elegans] ref|NP_491437.1| C10H11.4 [Caenorhabditis elegans] 1.0E-179
blast CAB03267 Hypothetical protein T01G5.3 [Caenorhabditis elegans] ref|NP_506730.1| Serpentine Receptor, class J family member (srj-27) [Caenorhabditis elegans] 1.0E-168
blast CAB16551 Hypothetical protein ZK262.10 [Caenorhabditis elegans] ref|NP_507604.1| Serpentine Receptor, class J family member (srj-26) [Caenorhabditis elegans] 2.0E-99
blast CAE74774 Hypothetical protein CBG22603 [Caenorhabditis briggsae] 2.0E-92
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 9.9E-19
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506730.1 7 10-29,42-64,84-106,126-148,197-219,247-269,279-301
T01G5.3 7 10-29,42-64,84-106,126-148,197-219,247-269,279-301
SNAP00000029273 7 10-29,42-61,65-87,107-129,177-199,227-249,259-281
GENEFINDER00000029276 8 7-29,44-66,87-106,126-148,201-223,247-269,281-303,756-778
Sequence
Target Sequence 
>C. ELEGANS:179212_AT
gtctgttgcatattgcgctgtactgatggcgatatggttttatgctgcctatgtattcgt
actggcacaaaaagaaagtcgtctttatttggaaacaatttttagggaaaaatttgatca
ggatatcaatgacttgaacattgtgattgctttatatggagatgcaagtatagaaataat
acgaaattcgtggactggaatattgatcggaacctttatttcattgtattcagttgtagt
ttatgttgtactcggaactcaaattgtccataaactccaaagtacagatttagtaatgag
tgataagacgaagtatctccagaaacaattaatgaatgcactaatggtacaagctacaat
tccaatgatcgtctgctttacaccatgtttcttggcttggtaccttccagtctttaacct
agatattggtaattggatatattggacatctactgttgccatttcattttttcccgttct
tgatccactgtcgcttttttattttcttcctgtgtttggagcgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCTGTTGCATATTGCGCTGTACTG 460 471 414 Antisense
GGCGATATGGTTTTATGCTGCCTAT 411 541 441 Antisense
TTATGCTGCCTATGTATTCGTACTG 241 679 453 Antisense
GAACTCAAATTGTCCATAAACTCCA 632 347 668 Antisense
GCTACAATTCCAATGATCGTCTGCT 51 303 766 Antisense
AATGATCGTCTGCTTTACACCATGT 285 165 777 Antisense
CCATGTTTCTTGGCTTGGTACCTTC 389 267 796 Antisense
GTACCTTCCAGTCTTTAACCTAGAT 9 457 813 Antisense
GACATCTACTGTTGCCATTTCATTT 97 371 858 Antisense
TTGATCCACTGTCGCTTTTTTATTT 106 705 893 Antisense
ATTTTCTTCCTGTGTTTGGAGCGAG 62 15 914 Antisense
Sequence Source Affymetrix Proprietary Database