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[179211_s_at]

Description W09G3.2 /REP_DB=WormBase Gene ID /WP=CE16568 /TR=O18188 /GB=CAB04951.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 08      4grp_highest_8_8 > 37      4grp_high_8_8 > 01      6grp_highest_nonorm > 60      6grp_total > 09      4grp_total > 07      6grp_highest_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 320
1 2 3 4 range
A 590.8
(0.9)
P 		384.2
(-3)
P 		512.2
(-0.6)
P 		703.8
(3)
P 		320
B 623.2
(3)
P 		470.4
(-3)
P 		587.3
(1.6)
P 		573.9
(1.1)
P 		153
C 526.2
(0.9)
P 		555.9
(3)
P 		472.8
(-3)
P 		549.2
(2.5)
P 		83
avr 580.1
(1.8) 		470.2
(-3) 		524.1
(-0.7) 		609
(3) 		139

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 372
1 2 3 4 5 6 range
A 636.1
(3)
P 		360.5
(-2.8)
P 		353.2
(-3)
P 		391.9
(-2.2)
P 		395.5
(-2.1)
P 		366.8
(-2.7)
P 		283
B 492
(1.3)
P 		437.1
(-0)
P 		493.4
(1.3)
P 		562.3
(3)
P 		403.7
(-0.8)
P 		314.6
(-3)
P 		248
C 686.8
(3)
P 		340.9
(-3)
P 		393.3
(-2.1)
P 		390.3
(-2.1)
P 		383.2
(-2.3)
P 		364.5
(-2.6)
P 		346
avr 605
(3) 		379.5
(-2.3) 		413.3
(-1.5) 		448.2
(-0.7) 		394.1
(-1.9) 		348.6
(-3) 		256
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 132
1 2 3 4 range
A 215.1
(3)
P 		83.4
(-3)
P 		133.9
(-0.7)
P 		103
(-2.1)
P 		132
B 198.7
(3)
P 		116.2
(-3)
P 		136.1
(-1.6)
P 		122.3
(-2.6)
P 		83
C 174.2
(3)
P 		159.8
(1.9)
P 		164.8
(2.3)
P 		92.6
(-3)
P 		82
avr 196
(3) 		119.8
(-2.1) 		144.9
(-0.4) 		106
(-3) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 178
1 2 3 4 5 6 range
A 117.3
(1.7)
P 		128.2
(3)
P 		76.9
(-3)
P 		99.4
(-0.4)
P 		119.4
(2)
P 		89.3
(-1.5)
P 		51
B 171.2
(3)
P 		145.5
(0.1)
P 		119.8
(-2.7)
P 		148.9
(0.5)
P 		164
(2.2)
P 		117.3
(-3)
P 		54
C 254.6
(3)
P 		104
(-2.1)
P 		100.1
(-2.3)
P 		78.5
(-3)
P 		124
(-1.4)
P 		122
(-1.5)
P 		176
avr 181
(3) 		125.9
(-1) 		98.9
(-3) 		108.9
(-2.3) 		135.8
(-0.3) 		109.5
(-2.2) 		82
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179211_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.365
Sequence Type Exemplar sequence
Representative Public ID W09G3.2 NCBI
Target Description W09G3.2 /REP_DB=WormBase Gene ID /WP=CE16568 /TR=O18188 /GB=CAB04951.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061015(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061015 NCBI Caenorhabditis elegans W09G3.2 (W09G3.2) mRNA, complete cds. 11/11 None
SNAP00000042885 ENSEMBL cdna:SNAP chromosome:CEL140:I:13807622:13820230:-1 11/11 None
GENEFINDER00000042896 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13810588:13822422:-1 10/11 None
W09G3.2.1 ENSEMBL cdna:known chromosome:CEL140:I:13814688:13820386:-1 gene:W09G3.2 11/11 None
W09G3.2.2 ENSEMBL cdna:known chromosome:CEL140:I:13815036:13820386:-1 gene:W09G3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13815188-13820161(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W09G3.2
Entrez Gene 173248 Entrez gene
SwissProt O18188 EMBL-EBI
WormBase CE16568 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04951 Hypothetical protein W09G3.2 [Caenorhabditis elegans] ref|NP_493416.1| W09G3.2 [Caenorhabditis elegans] 0.0
blast CAE68014 Hypothetical protein CBG13627 [Caenorhabditis briggsae] 1.0E-135
blast CAE68014 Hypothetical protein CBG13627 [Caenorhabditis briggsae] 1.0E-134
blast CAE68014 Hypothetical protein CBG13627 [Caenorhabditis briggsae] 1.0E-109
Sequence
Target Sequence 
>C. ELEGANS:179211_S_AT
aatgggcgccattgcatgtacccttgaacaatcacgtcttcgaaatccggagctccacgc
cgccgatcgatatcagaaatgcgcggcgctttttatcgaagaagcgcatcggatttttga
gattcatgggaacacggcgctcgccacactgatacaatatggtctagcgacacaaaagac
cccgtcatgtcataatgacgagaaaaccccgctggataagcaaaagtgcatagtatgccg
tccggacgtgtggccaattgccgagaatcttccctattcccacgtggcaaattctcggat
tttctgctcgttatccggaaaattatgcgatgatgataagaatattccgtttctttttcc
atcagggcatgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGGGCGCCATTGCATGTACCCTT 613 163 816 Antisense
TACCCTTGAACAATCACGTCTTCGA 470 649 834 Antisense
AAATGCGCGGCGCTTTTTATCGAAG 444 91 892 Antisense
GAGATTCATGGGAACACGGCGCTCG 649 395 934 Antisense
GCGACACAAAAGACCCCGTCATGTC 570 287 982 Antisense
GACGAGAAAACCCCGCTGGATAAGC 390 337 1012 Antisense
TGCATAGTATGCCGTCCGGACGTGT 297 575 1042 Antisense
TCCGGACGTGTGGCCAATTGCCGAG 294 595 1056 Antisense
AATTGCCGAGAATCTTCCCTATTCC 157 177 1071 Antisense
AATTCTCGGATTTTCTGCTCGTTAT 219 177 1105 Antisense
GTTTCTTTTTCCATCAGGGCATGTA 58 449 1164 Antisense
Sequence Source Affymetrix Proprietary Database