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[179210_at]

Description T05F1.9 /REP_DB=WormBase Gene ID /WP=CE20037 /TR=Q9XUR3 /GB=CAB04693.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 11      6grp_total > 22      4grp_total > 55      6grp_high1_sub > De      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 295
1 2 3 4 range
A 316.8
(3)
P 		82.2
(-2.3)
P 		130.5
(-1.2)
P 		53.3
(-3)
A 		264
B 309.2
(3)
P 		82.4
(-1.8)
M 		112.6
(-1.2)
P 		27.5
(-3)
A 		282
C 322.5
(3)
P 		107
(-1.7)
P 		81.9
(-2.3)
P 		48.7
(-3)
A 		274
avr 316.2
(3) 		90.5
(-2) 		108.3
(-1.6) 		43.2
(-3) 		273

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 41.2
(-0.9)
A 		78.1
(2.2)
P 		87.7
(3)
P 		54.4
(0.2)
M 		34.6
(-1.4)
A 		15.6
(-3)
A 		72
B 95.4
(3)
P 		95.6
(3)
P 		67.8
(0)
P 		80.5
(1.4)
P 		39.3
(-3)
P 		39.9
(-2.9)
P 		56
C 84.4
(1.5)
P 		110.2
(3)
P 		65.4
(0.3)
A 		47.5
(-0.7)
A 		32.2
(-1.7)
A 		9.8
(-3)
A 		100
avr 73.7
(1.3) 		94.6
(3) 		73.6
(1.3) 		60.8
(0.2) 		35.4
(-1.9) 		21.8
(-3) 		73
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 115.3
(3)
P 		17.8
(-2.4)
P 		34.1
(-1.5)
P 		7.8
(-3)
A 		108
B 98.6
(3)
P 		20.4
(-2.1)
M 		26.1
(-1.7)
P 		5.9
(-3)
A 		93
C 106.8
(3)
P 		30.8
(-1.6)
P 		28.5
(-1.8)
P 		8.2
(-3)
A 		99
avr 106.9
(3) 		23
(-2.1) 		29.6
(-1.7) 		7.3
(-3) 		100

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 7.6
(-2.1)
A 		27.8
(3)
P 		19.1
(0.8)
P 		13.8
(-0.5)
M 		10.4
(-1.4)
A 		3.8
(-3)
A 		24
B 33.2
(3)
P 		31.8
(2.5)
P 		16.5
(-2.5)
P 		21.3
(-0.9)
P 		16
(-2.6)
P 		14.9
(-3)
P 		18
C 31.3
(2.5)
P 		33.6
(3)
P 		16.6
(-0.4)
A 		9.5
(-1.8)
A 		10.4
(-1.6)
A 		3.3
(-3)
A 		30
avr 24
(1.2) 		31.1
(3) 		17.4
(-0.5) 		14.9
(-1.1) 		12.3
(-1.7) 		7.3
(-3) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179210_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2214
Sequence Type Exemplar sequence
Representative Public ID T05F1.9 NCBI
Target Description T05F1.9 /REP_DB=WormBase Gene ID /WP=CE20037 /TR=Q9XUR3 /GB=CAB04693.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060161(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060161 NCBI Caenorhabditis elegans T05F1.9 (T05F1.9) mRNA, complete cds. 11/11 None
GENEFINDER00000020960 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9653820:9655726:1 11/11 None
SNAP00000020947 ENSEMBL cdna:SNAP chromosome:CEL140:I:9653844:9655726:1 11/11 None
T05F1.9 ENSEMBL cdna:known chromosome:CEL140:I:9653820:9655726:1 gene:T05F1.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9653750-9655657(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T05F1.9
Entrez Gene 188139 Entrez gene
SwissProt Q9XUR3 EMBL-EBI
WormBase CE20037 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04693 Hypothetical protein T05F1.9 [Caenorhabditis elegans] ref|NP_492562.1| T05F1.9 [Caenorhabditis elegans] 0.0
blast CAE60194 Hypothetical protein CBG03754 [Caenorhabditis briggsae] 1.0E-128
blast CAE60194 Hypothetical protein CBG03754 [Caenorhabditis briggsae] 1.0E-126
blast AAN65308 Hypothetical protein R05H11.1 [Caenorhabditis elegans] 2.0E-10
Sequence
Target Sequence 
>C. ELEGANS:179210_AT
gactttagatgtccattgccagacgattggagtaatccaaaaattctgaagctagacaaa
ctagtttcatggccatcagaatggttcacaactagtgatttattgacgaaattagattgt
gaatgtgctcaattgaacgagacaaatctggattgtagagcattcaaagcattcatgctc
aagtggaaaatgttagacaatacaagactgaaaatgcttgaaatttcatttgatggagat
tggacattatttaattatgatgggcttgacgcaaagaaatggaatcctgaggaaagagat
ggacattatccagatctactcgggaaaccgggagcccaatggttgaattgtgaatttgta
atggatattcaaagagacgacggaatgctggcttcattttggagaagagagcagagtttt
cattttgtagtttggcatgatcgtcatccaattgccacgttgcaaccggatccagatctt
cttttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTTTAGATGTCCATTGCCAGACG 173 371 559 Antisense
GACAAACTAGTTTCATGGCCATCAG 393 365 613 Antisense
ATGGCCATCAGAATGGTTCACAACT 533 53 627 Antisense
GGACATTATCCAGATCTACTCGGGA 335 525 859 Antisense
TACTCGGGAAACCGGGAGCCCAATG 112 637 875 Antisense
AGAGACGACGGAATGCTGGCTTCAT 556 69 931 Antisense
GAGAGCAGAGTTTTCATTTTGTAGT 275 395 965 Antisense
TTTGTAGTTTGGCATGATCGTCATC 240 667 982 Antisense
GCATGATCGTCATCCAATTGCCACG 22 311 993 Antisense
CAATTGCCACGTTGCAACCGGATCC 5 181 1007 Antisense
GCAACCGGATCCAGATCTTCTTTTG 12 319 1020 Antisense
Sequence Source Affymetrix Proprietary Database