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[179209_at]

Description Y6E2A.8 /REP_DB=WormBase Gene ID /WP=CE16584 /TR=O45975 /GB=CAA15969.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 58      4grp_total > 01      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 0.7
(-3)
A 		2.3
(0.3)
A 		3.6
(3)
A 		2
(-0.3)
A 		3
B 2.2
(-2.8)
A 		1.7
(-3)
A 		4.7
(-1.7)
A 		16
(3)
A 		14
C 6.4
(-2.1)
A 		0.8
(-3)
A 		2.6
(-2.7)
A 		37.5
(3)
A 		37
avr 3.1
(-2.5) 		1.6
(-3) 		3.6
(-2.3) 		18.5
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 1.9
(-2)
A 		0.8
(-3)
A 		3.5
(-0.7)
A 		2.5
(-1.5)
A 		7.7
(3)
A 		2.9
(-1.2)
A 		7
B 2.2
(-2.6)
A 		5.9
(-1.6)
A 		5.4
(-1.8)
A 		0.7
(-3)
A 		2.9
(-2.4)
A 		23.8
(3)
A 		23
C 16.5
(3)
A 		4
(-2)
A 		1.9
(-2.8)
A 		2.7
(-2.5)
A 		1.5
(-3)
A 		2.7
(-2.5)
A 		15
avr 6.9
(0.8) 		3.6
(-1.8) 		3.6
(-1.8) 		2
(-3) 		4
(-1.5) 		9.8
(3) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 0.3
(-3)
A 		0.5
(-1)
A 		0.9
(3)
A 		0.3
(-3)
A 		1
B 0.7
(-2.4)
A 		0.4
(-3)
A 		1.1
(-1.6)
A 		3.4
(3)
A 		3
C 2.1
(-1.1)
A 		0.2
(-3)
A 		0.9
(-2.3)
A 		6.3
(3)
A 		6
avr 1
(-1.8) 		0.4
(-3) 		1
(-1.8) 		3.3
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.4
(-2.7)
A 		0.3
(-3)
A 		0.8
(-1.5)
A 		0.6
(-2.1)
A 		2.3
(3)
A 		0.7
(-1.8)
A 		2
B 0.8
(-2.6)
A 		2
(-1.8)
A 		1.3
(-2.2)
A 		0.2
(-3)
A 		1.2
(-2.3)
A 		8.9
(3)
A 		9
C 6.1
(3)
A 		1.2
(-2.3)
A 		0.5
(-3)
A 		0.5
(-3)
A 		0.5
(-3)
A 		0.9
(-2.6)
A 		6
avr 2.4
(0.9) 		1.2
(-1.5) 		0.9
(-2) 		0.4
(-3) 		1.3
(-1.3) 		3.5
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179209_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13019
Sequence Type Exemplar sequence
Representative Public ID Y6E2A.8 NCBI
Target Description Y6E2A.8 /REP_DB=WormBase Gene ID /WP=CE16584 /TR=O45975 /GB=CAA15969.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074513(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074513 NCBI Caenorhabditis elegans Y6E2A.8 (Y6E2A.8) mRNA, complete cds. 11/11 None
SNAP00000013594 ENSEMBL cdna:SNAP chromosome:CEL140:V:15727433:15729286:-1 11/11 None
GENEFINDER00000013599 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15727433:15729286:-1 11/11 None
Y6E2A.8 ENSEMBL cdna:known chromosome:CEL140:V:15727433:15728092:-1 gene:Y6E2A.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15727432-15728092(-) 67.73 100.0
Public Domain and Genome References
Gene Title
Ensembl Y6E2A.8
Entrez Gene 189379 Entrez gene
SwissProt O45975 EMBL-EBI
WormBase CE16584 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA15969 Hypothetical protein Y6E2A.8 [Caenorhabditis elegans] ref|NP_506914.1| Y6E2A.8 [Caenorhabditis elegans] 6.0E-51
blast CAA15969 Hypothetical protein Y6E2A.8 [Caenorhabditis elegans] ref|NP_506914.1| Y6E2A.8 [Caenorhabditis elegans] 2.0E-50
blast CAE66302 Hypothetical protein CBG11552 [Caenorhabditis briggsae] 2.0E-45
blast CAE66302 Hypothetical protein CBG11552 [Caenorhabditis briggsae] 2.0E-31
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000013594 1 189-211
Sequence
Target Sequence 
>C. ELEGANS:179209_AT
cgtcgatgggaacgtcagttgttgaagctggaaatcgaacgggaagcgaaacagctcaat
attgaactggaaaagtcgaatttgtatgatgaatggagaatggattgcatcaaaatagcg
gatgagaagcacgcgtggatgaatgattttgcgagaagaactcaagatgatccgtatcat
gctcctggtgaggagaagaaatgggctgacgagagacggaagctgaggaagattgaaaag
gatttgaagatgagaaaacgggaaacaatgaaaagggccgagaagatgaaggaggctgaa
cttaaaaagaagaaggaaagtagtaaaagcaaggaggaagataagaataaaaagaaggaa
gttaagattaaaagtgctccaaagacatctgcaaaaaaatctgcaaagaaatctgcaaag
aaagaacagaagaagtcggagaaaaaagtgaaggaagttcccgaaaaggcacaaaagagc
aagaaggagaaaagtgacaaatttgtttttgaagaaggctcaagaagagttgaatacact
gatgtgccgagtttggagaaggaaaaaacggtgtcagtagagcaacctacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTCGATGGGAACGTCAGTTGTTGA 46 247 49 Antisense
TTGAAGCTGGAAATCGAACGGGAAG 493 647 70 Antisense
GAACGGGAAGCGAAACAGCTCAATA 432 347 85 Antisense
ATAGCGGATGAGAAGCACGCGTGGA 645 21 163 Antisense
GAAGCACGCGTGGATGAATGATTTT 582 341 174 Antisense
GAAGAACTCAAGATGATCCGTATCA 167 341 203 Antisense
TCCGTATCATGCTCCTGGTGAGGAG 241 591 219 Antisense
GGGCTGACGAGAGACGGAAGCTGAG 171 409 251 Antisense
AAAGTGCTCCAAAGACATCTGCAAA 91 123 419 Antisense
GAATACACTGATGTGCCGAGTTTGG 405 325 580 Antisense
ACGGTGTCAGTAGAGCAACCTACGA 472 95 616 Antisense
Sequence Source Affymetrix Proprietary Database